Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of IdnR regulog to Serratia proteamaculans 568

Reference regulog properties
Source regulog: IdnR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: activator (repressor)
Biological process: Idonate utilization
Effector: L-idonate; 5-dehydro-D-gluconate
Phylum: Proteobacteria/Gamma
Propagated regulon:
Target genome Serratia proteamaculans 568
Orthologous TF(s) Spro_3289
Regulated genes 2
Built upon 7 sites [see more]
Predicted regulatory interactions in Serratia proteamaculans 568
Locus tag Position Score Sequence
Position: -121
Score: 5.1
Sequence: TCACGTTAAAGGTAACAGCT
Locus tag: Spro_3288
Spro_3288 -121 5.1 TCACGTTAAAGGTAACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnO
Ortholog function: 5-keto-D-gluconate 5-reductase (EC 1.1.1.69)
Citrobacter koseri ATCC BAA-895 CKO_02793 -39 5.3 TACAGTTACGCGTAACAGCT
Escherichia coli str. K-12 substr. MG1655 b4266 -117 5.9 TCACGTTATGCGTAACATAG
Salmonella typhimurium LT2 STM4483 -117 5.9 TCACGTTATGCGTAACATTG
Serratia proteamaculans 568 Spro_3288 -121 5.1 TCACGTTAAAGGTAACAGCT
Position: -169
Score: 5.1
Sequence: AGCTGTTACCTTTAACGTGA
Locus tag: Spro_3289
Spro_3289 -169 5.1 AGCTGTTACCTTTAACGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnR
Ortholog function: Positive regulator of L-idonate catabolism
Citrobacter koseri ATCC BAA-895 CKO_02791 -39 5.3 TACAGTTACGCGTAACAGCT
Escherichia coli str. K-12 substr. MG1655 b4264 -117 5.9 TCACGTTATGCGTAACATAG
Salmonella typhimurium LT2 STM4481 -117 5.9 TCACGTTATGCGTAACATTG
Serratia proteamaculans 568 Spro_3289 -169 5.1 AGCTGTTACCTTTAACGTGA