Propagation of ExuR regulog to Serratia proteamaculans 568
| Source regulog: | ExuR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization |
| Effector: | Galacturonate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Serratia proteamaculans 568 |
| Orthologous TF(s) | Spro_4323 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -80
Score: 5 Sequence: AATTTGGTATAACAAGATT
Locus tag: Spro_3238
|
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| Spro_3238 | -80 | 5 | AATTTGGTATAACAAGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuA | ||||
| Ortholog function: Mannonate dehydratase (EC 4.2.1.8) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00609 | -31 | 5.3 | AATTTGGTATAACAACTTG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02604 | -34 | 5.5 | TTATTGGTATAACAACTTT |
| Enterobacter sp. 638 | Ent638_2767 | -32 | 5.7 | ATATTGGTATAACAACTTT |
| Yersinia pestis KIM | y2902 | -240 | 5.2 | AAATCGGTATAACAACATT |
| Serratia proteamaculans 568 | Spro_3238 | -80 | 5 | AATTTGGTATAACAAGATT |
| Edwardsiella tarda EIB202 | ETAE_2289 | -101 | 4.7 | GATTTGGTATGACAGATTA |
|
Position: -275
Score: 3.9 Sequence: ATCTTGTTATACCAAATTT
Position: -64
Score: 5.3 Sequence: AAACTGGTCTGATAACTTC
Locus tag: Spro_3239
|
||||
| Spro_3239 | -275 | 3.9 | ATCTTGTTATACCAAATTT | |
| -64 | 5.3 | AAACTGGTCTGATAACTTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuB | ||||
| Ortholog function: D-mannonate oxidoreductase (EC 1.1.1.57) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00608 | -191 | 4.4 | AAGTTGTTATACCAAATTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02605 | -193 | 3.7 | AAAGTtGTtatACcAaTaa |
| Enterobacter sp. 638 | Ent638_2768 | -193 | 3.8 | AAAGTtGTtatACcAaTaT |
| Yersinia pestis KIM | y2903 | -91 | 5.3 | AAACTGGTCTAACAACTTT |
| Serratia proteamaculans 568 | Spro_3239 | -64 | 5.3 | AAACTGGTCTGATAACTTC |
| Edwardsiella tarda EIB202 | ETAE_2291 | -89 | 4.7 | CAAGTGGTCTAACACCTTT |
|
Position: -209
Score: 5.2 Sequence: GAATTGGTATACCAACTTT
Locus tag: Spro_3599
|
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| Spro_3599 | -209 | 5.2 | GAATTGGTATACCAACTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lfaT | ||||
| Ortholog function: Putative MFS superfamily hexuronate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02296 | -59 | 4.6 | AAATTTGTGTGACACCAAA |
| Enterobacter sp. 638 | Ent638_1313 | -60 | 4.4 | TAATCTGTGTGACAACCGA |
| Serratia proteamaculans 568 | Spro_3599 | -209 | 5.2 | GAATTGGTATACCAACTTT |
|
Position: -196
Score: 4.8 Sequence: TAATTGGACTGATAAATCT
Position: -174
Score: 4.4 Sequence: AAGTTGGTATACCAATTCA
Locus tag: Spro_3600
|
||||
| Spro_3600 | -196 | 4.8 | TAATTGGACTGATAAATCT | |
| -174 | 4.4 | AAGTTGGTATACCAATTCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lfaR | ||||
| Ortholog function: putative transcriptional regulator, LacI family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02295 | -157 | 5.8 | TAAGTTGTGTGACAAGTTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00854 | -195 | 4.5 | TCATTGGTATAACTAGTAT |
| Enterobacter sp. 638 | Ent638_1314 | -175 | 5.6 | GAAGTTGTGTGACAAGTTC |
| Serratia proteamaculans 568 | Spro_3600 | -196 | 4.8 | TAATTGGACTGATAAATCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1966 | -176 | 4.8 | AAATTGGTTTACCAAATTG |
|
Position: -70
Score: 6.2 Sequence: AAATTGGTGTGATAACTTT
Locus tag: Spro_4321
|
||||
| Spro_4321 | -70 | 6.2 | AAATTGGTGTGATAACTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Yersinia pestis KIM | y3600 | -69 | 6 | TAATTGGTGTGATAACTTT |
| Serratia proteamaculans 568 | Spro_4321 | -70 | 6.2 | AAATTGGTGTGATAACTTT |
|
Position: -157
Score: 5.6 Sequence: AAATCTGTATGACAAGTTA
Locus tag: Spro_4322
|
||||
| Spro_4322 | -157 | 5.6 | AAATCTGTATGACAAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exuT | ||||
| Ortholog function: Hexuronate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3093 | -129 | 6.2 | AAAGTTGTATGACAAGTTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04495 | -227 | 5.7 | GAAGTTGTATGACAAGTTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03521 | -240 | 6.2 | AAAGTTGTATGACAAGTTA |
| Enterobacter sp. 638 | Ent638_3547 | -116 | 6.2 | AAAGTTGTATGACAAGTTA |
| Yersinia pestis KIM | y3601 | -515 | 5.6 | AAAtctGTATGACAAgTTa |
| Serratia proteamaculans 568 | Spro_4322 | -157 | 5.6 | AAATCTGTATGACAAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0644 | -185 | 6.2 | AAAGTTGTATGACAAATTA |
| Edwardsiella tarda EIB202 | ETAE_0435 | -282 | 5.2 | GAATCTGTATGACAAGTTA |
|
Position: -57
Score: 5.8 Sequence: TAAGTGGTATAACAAATCC
Locus tag: Spro_4323
|
||||
| Spro_4323 | -57 | 5.8 | TAAGTGGTATAACAAATCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exuR | ||||
| Ortholog function: D-galacturonate transcriptional repressor, GntR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3094 | -47 | 6 | AAAGTGGTATAACAAATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04496 | -47 | 6 | AAAGTGGTATAACAAATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03522 | -48 | 5.8 | AAAGTGGTATAACAAATCG |
| Enterobacter sp. 638 | Ent638_3548 | -45 | 6.1 | AAAGTGGTATAACAAATCA |
| Yersinia pestis KIM | y3602 | -105 | 5.8 | TAAGTGGTATAACAAATCC |
| Serratia proteamaculans 568 | Spro_4323 | -57 | 5.8 | TAAGTGGTATAACAAATCC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0643 | -98 | 5.9 | TAAGTGGTATAACAAATCA |
| Edwardsiella tarda EIB202 | ETAE_0434 | -68 | 5.8 | AAAGTGGTATAACAACTCG |