Propagation of NtrC regulog to Serratia proteamaculans 568

Reference regulog properties
Source regulog:	NtrC - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Serratia proteamaculans 568
Orthologous TF(s)	Spro_4883
Regulated genes	10

Built upon 130 sites [see more]

Predicted regulatory interactions in *Serratia proteamaculans 568*
	Locus tag	Position	Score	Sequence
Position: -214 Score: 4.5 Sequence: AGCGCCATTTTGGTGCT Position: -195 Score: 4.5 Sequence: CGCACTTTGATGGTGCG Locus tag: Spro_0932
	Spro_0932	-214	4.5	AGCGCCATTTTGGTGCT
		-195	4.5	CGCACTTTGATGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_0872
Ortholog function: Predicted ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01766	-211	3.9	GGCGCCAGCGTGGTGCT
		-193	5.1	TGCATTATTATGGTGCA
Erwinia amylovora ATCC 49946	EAM_0872	-247	3.7	GGCGCCAGTCTGGTGCT
		-229	4.3	TGCCCTATTTCGGGGCA
Yersinia pestis KIM	y0932	-205	5.5	TGCACCTAAATGGTGCG
Serratia proteamaculans 568	Spro_0932	-214	4.5	AGCGCCATTTTGGTGCT
		-195	4.5	CGCACTTTGATGGTGCG

Position: -192 Score: 5.3 Sequence: CGCACCAAAGTAGTGCG Locus tag: Spro_1109
	Spro_1109	-192	5.3	CGCACCAAAGTAGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655	b0450	-137	5.2	TGCACTGTCATAGTGCG
Salmonella typhimurium LT2	STM0462	-177	5.2	TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895	CKO_02708	-147	5.3	TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00413	-181	5.3	TGCACCGTTGTGGTGCA
Enterobacter sp. 638	Ent638_0918	-160	5.3	TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946	EAM_1004	-209	4.7	TGCATCATTTTAGTGCG
		-189	5.1	TGAACTATTTTGGTGCA
Yersinia pestis KIM	y1041	-191	5.8	TGCACCAACTTGGTGCG
Serratia proteamaculans 568	Spro_1109	-192	5.3	CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1160	-244	5.8	TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202	ETAE_1003	-152	5.2	TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320	PMI0126	-114	4.7	TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3857	-173	5.5	TGCACTAATTCGGTGCA

Position: -212 Score: 4.8 Sequence: GGCACCATAAGGGTGCA Position: -183 Score: 5 Sequence: TGCATTAATTTGGTGCG Locus tag: Spro_1214
	Spro_1214	-212	4.8	GGCACCATAAGGGTGCA
		-183	5	TGCATTAATTTGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Yersinia pestis KIM	y1189	-278	4.2	TGCCTCTATTTGGTGCG
Serratia proteamaculans 568	Spro_1214	-212	4.8	GGCACCATAAGGGTGCA
		-183	5	TGCATTAATTTGGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1314	-300	5.3	CGCACCAAATTGGTGCC
Photorhabdus luminescens subsp. laumondii TTO1	plu1307	-239	4.2	TGCACCAAAAAAATGAT

Position: -176 Score: 4.2 Sequence: AGCACCATTTTGGGGCC Position: -163 Score: 4.3 Sequence: GGCCTCAATTTGGTGCA Locus tag: Spro_1479
	Spro_1479	-176	4.2	AGCACCATTTTGGGGCC
		-163	4.3	GGCCTCAATTTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, substrate-binding component
Enterobacter sp. 638	Ent638_1298	-172	5	CGCACCAAAACAGTGCC
		-159	4.5	TGCCTCACTTTGGTGCA
Serratia proteamaculans 568	Spro_1479	-176	4.2	AGCACCATTTTGGGGCC
		-163	4.3	GGCCTCAATTTGGTGCA

Position: -230 Score: 3.9 Sequence: TGCACCTTTAATGAGCA Locus tag: Spro_1823
	Spro_1823	-230	3.9	TGCACCTTTAATGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rutA
Ortholog function: Pyrimidine oxygenase
Escherichia coli str. K-12 substr. MG1655	b1012	-168	3.9	TGCACTCTCATCGCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01038	-223	4.1	TGCACCCTGATTGCGCA
		-189	3.8	TGCACTGATTTTGACCA
Enterobacter sp. 638	Ent638_1525	-227	4.1	TGCACCGCCATCGCGCA
Serratia proteamaculans 568	Spro_1823	-230	3.9	TGCACCTTTAATGAGCA

Position: -204 Score: 4.4 Sequence: TGCCCAATTGTTGTGCA Locus tag: Spro_2345
	Spro_2345	-204	4.4	TGCCCAATTGTTGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_01526
Ortholog function: Predicted transcriptional regulator, RpiR family
Citrobacter koseri ATCC BAA-895	CKO_01526	-151	3.5	TGCACAAATGTTGATCA
Serratia proteamaculans 568	Spro_2345	-204	4.4	TGCCCAATTGTTGTGCA

Position: 32 Score: 3.8 Sequence: TGCAGTGACGTTGGGCA Locus tag: Spro_2347
	Spro_2347	32	3.8	TGCAGTGACGTTGGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ddpA
Ortholog function: Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
Escherichia coli str. K-12 substr. MG1655	b1487	-148	4.1	TGCACCAAAACTGCACT
		-127	3.5	TGCACAAATGTTGATCA
Citrobacter koseri ATCC BAA-895	CKO_01524	-151	3.5	TGCACAAATGTTGATCA
Serratia proteamaculans 568	Spro_2347	-204	4.4	TGCCCAATTGTTGTGCA

Position: -265 Score: 4.4 Sequence: CGCACTGAATTAGGGCG Position: -243 Score: 4.3 Sequence: TGCACCATAATGATCCC Locus tag: Spro_3326
	Spro_3326	-265	4.4	CGCACTGAATTAGGGCG
		-243	4.3	TGCACCATAATGATCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655	b2309	-162	5.5	TGCACTATCGTGGTGCA
Salmonella typhimurium LT2	STM2354	-211	4.4	GGAACTATCACGGTGCA
		-182	5.1	TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_00478	-212	4.3	TTAACCATCACGGTGCG
		-183	5.8	TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02699	-215	5.3	TGCCCCAAAAGGGTGCA
		-185	4	TGGATCATTTCAGTGCA
Enterobacter sp. 638	Ent638_2858	-212	4.1	TTCCCTGTCACGGTGCG
		-182	5.2	TGACCCAATATGGTGCA
Yersinia pestis KIM	y1607	-123	4.8	AGCACTGAAATGGGGCA
Serratia proteamaculans 568	Spro_3326	-265	4.4	CGCACTGAATTAGGGCG
		-243	4.3	TGCACCATAATGATCCC

Position: -220 Score: 5.2 Sequence: TGCACCATTACAGTGCT Position: -188 Score: 5.2 Sequence: TGCACCATTTAAGTGCA Locus tag: Spro_4881
	Spro_4881	-220	5.2	TGCACCATTACAGTGCT
		-188	5.2	TGCACCATTTAAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655	b3870	-221	5.9	TGCACCAACATGGTGCT
		-189	5.4	AGCACTATATTGGTGCA
Salmonella typhimurium LT2	STM4007	-224	5.5	TGCACCAATGTGGTGCT
		-192	5.2	AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_03140	-202	5.9	TGCACCAACATGGTGCT
		-170	5.4	AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04178	-251	6	TGCACCAAAATGGTGCT
		-219	5.2	AGCACTATTTTGGTGCA
Enterobacter sp. 638	Ent638_4096	-237	5.3	CGCACCATTATGGTGCT
		-205	5.6	AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946	EAM_0032	-288	5.1	TGCACCAAAATGGTGAC
		-256	5.3	AGCACCAGAATGGTGCG
Yersinia pestis KIM	y3804	-384	5.6	TGCACCAAAATAGTGCC
		-353	5.5	GGCACCAAAATAGTGCA
Serratia proteamaculans 568	Spro_4881	-220	5.2	TGCACCATTACAGTGCT
		-188	5.2	TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0029	-218	5.3	TGCACCAAACAAGTGCA
		-186	5.4	AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202	ETAE_3493	-220	5.5	TGCACCAAGATTGTGCG
		-188	5.2	TGCACCATTATGGAGCA
Proteus mirabilis HI4320	PMI2882	-223	5.9	TGCACCAAAATTGTGCA
		-189	5.8	TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1	plu0237	-303	5.1	CGCACTAATATTGTGCG
		-272	5.9	TGCACCAATATAGTGCA

Position: -29 Score: 5.8 Sequence: TGCACTAAAAAGGTGCA Locus tag: Spro_4882
	Spro_4882	-29	5.8	TGCACTAAAAAGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655	b3869	-38	6.1	TGCACTAAAATGGTGCA
Salmonella typhimurium LT2	STM4006	-39	6.1	TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895	CKO_03143	-40	6	TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04177	-39	6	TGCACTAAATTGGTGCA
Enterobacter sp. 638	Ent638_4097	-38	5.8	TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946	EAM_0031	-40	5.7	TGCACTAAGTTGGTGCA
Yersinia pestis KIM	y3805	-29	5.3	TGCACCGAAACTGTGCA
Serratia proteamaculans 568	Spro_4882	-29	5.8	TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0028	-29	5.2	TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202	ETAE_3494	-28	6.1	TGCACCAAAATAGTGCA
Proteus mirabilis HI4320	PMI2883	-32	6.1	TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1	plu0236	-26	5.7	TGCACCAAAAAAGTGCA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of NtrC regulog to Serratia proteamaculans 568

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --