Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtrC regulog to Serratia proteamaculans 568

Reference regulog properties
Source regulog: NtrC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Serratia proteamaculans 568
Orthologous TF(s) Spro_4883
Regulated genes 10
Built upon 130 sites [see more]
Predicted regulatory interactions in Serratia proteamaculans 568
Locus tag Position Score Sequence
Position: -214
Score: 4.5
Sequence: AGCGCCATTTTGGTGCT
Position: -195
Score: 4.5
Sequence: CGCACTTTGATGGTGCG
Locus tag: Spro_0932
Spro_0932 -214 4.5 AGCGCCATTTTGGTGCT
-195 4.5 CGCACTTTGATGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: EAM_0872
Ortholog function: Predicted ABC transporter, substrate-binding component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01766 -211 3.9 GGCGCCAGCGTGGTGCT
-193 5.1 TGCATTATTATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0872 -247 3.7 GGCGCCAGTCTGGTGCT
-229 4.3 TGCCCTATTTCGGGGCA
Yersinia pestis KIM y0932 -205 5.5 TGCACCTAAATGGTGCG
Serratia proteamaculans 568 Spro_0932 -214 4.5 AGCGCCATTTTGGTGCT
-195 4.5 CGCACTTTGATGGTGCG
Position: -192
Score: 5.3
Sequence: CGCACCAAAGTAGTGCG
Locus tag: Spro_1109
Spro_1109 -192 5.3 CGCACCAAAGTAGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655 b0450 -137 5.2 TGCACTGTCATAGTGCG
Salmonella typhimurium LT2 STM0462 -177 5.2 TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895 CKO_02708 -147 5.3 TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00413 -181 5.3 TGCACCGTTGTGGTGCA
Enterobacter sp. 638 Ent638_0918 -160 5.3 TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946 EAM_1004 -209 4.7 TGCATCATTTTAGTGCG
-189 5.1 TGAACTATTTTGGTGCA
Yersinia pestis KIM y1041 -191 5.8 TGCACCAACTTGGTGCG
Serratia proteamaculans 568 Spro_1109 -192 5.3 CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1160 -244 5.8 TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202 ETAE_1003 -152 5.2 TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320 PMI0126 -114 4.7 TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3857 -173 5.5 TGCACTAATTCGGTGCA
Position: -212
Score: 4.8
Sequence: GGCACCATAAGGGTGCA
Position: -183
Score: 5
Sequence: TGCATTAATTTGGTGCG
Locus tag: Spro_1214
Spro_1214 -212 4.8 GGCACCATAAGGGTGCA
-183 5 TGCATTAATTTGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Yersinia pestis KIM y1189 -278 4.2 TGCCTCTATTTGGTGCG
Serratia proteamaculans 568 Spro_1214 -212 4.8 GGCACCATAAGGGTGCA
-183 5 TGCATTAATTTGGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1314 -300 5.3 CGCACCAAATTGGTGCC
Photorhabdus luminescens subsp. laumondii TTO1 plu1307 -239 4.2 TGCACCAAAAAAATGAT
Position: -176
Score: 4.2
Sequence: AGCACCATTTTGGGGCC
Position: -163
Score: 4.3
Sequence: GGCCTCAATTTGGTGCA
Locus tag: Spro_1479
Spro_1479 -176 4.2 AGCACCATTTTGGGGCC
-163 4.3 GGCCTCAATTTGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH
Ortholog function: Glutamine ABC transporter, substrate-binding component
Enterobacter sp. 638 Ent638_1298 -172 5 CGCACCAAAACAGTGCC
-159 4.5 TGCCTCACTTTGGTGCA
Serratia proteamaculans 568 Spro_1479 -176 4.2 AGCACCATTTTGGGGCC
-163 4.3 GGCCTCAATTTGGTGCA
Position: -230
Score: 3.9
Sequence: TGCACCTTTAATGAGCA
Locus tag: Spro_1823
Spro_1823 -230 3.9 TGCACCTTTAATGAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rutA
Ortholog function: Pyrimidine oxygenase
Escherichia coli str. K-12 substr. MG1655 b1012 -168 3.9 TGCACTCTCATCGCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01038 -223 4.1 TGCACCCTGATTGCGCA
-189 3.8 TGCACTGATTTTGACCA
Enterobacter sp. 638 Ent638_1525 -227 4.1 TGCACCGCCATCGCGCA
Serratia proteamaculans 568 Spro_1823 -230 3.9 TGCACCTTTAATGAGCA
Position: -204
Score: 4.4
Sequence: TGCCCAATTGTTGTGCA
Locus tag: Spro_2345
Spro_2345 -204 4.4 TGCCCAATTGTTGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_01526
Ortholog function: Predicted transcriptional regulator, RpiR family
Citrobacter koseri ATCC BAA-895 CKO_01526 -151 3.5 TGCACAAATGTTGATCA
Serratia proteamaculans 568 Spro_2345 -204 4.4 TGCCCAATTGTTGTGCA
Position: 32
Score: 3.8
Sequence: TGCAGTGACGTTGGGCA
Locus tag: Spro_2347
Spro_2347 32 3.8 TGCAGTGACGTTGGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ddpA
Ortholog function: Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
Escherichia coli str. K-12 substr. MG1655 b1487 -148 4.1 TGCACCAAAACTGCACT
-127 3.5 TGCACAAATGTTGATCA
Citrobacter koseri ATCC BAA-895 CKO_01524 -151 3.5 TGCACAAATGTTGATCA
Serratia proteamaculans 568 Spro_2347 -204 4.4 TGCCCAATTGTTGTGCA
Position: -265
Score: 4.4
Sequence: CGCACTGAATTAGGGCG
Position: -243
Score: 4.3
Sequence: TGCACCATAATGATCCC
Locus tag: Spro_3326
Spro_3326 -265 4.4 CGCACTGAATTAGGGCG
-243 4.3 TGCACCATAATGATCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655 b2309 -162 5.5 TGCACTATCGTGGTGCA
Salmonella typhimurium LT2 STM2354 -211 4.4 GGAACTATCACGGTGCA
-182 5.1 TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00478 -212 4.3 TTAACCATCACGGTGCG
-183 5.8 TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02699 -215 5.3 TGCCCCAAAAGGGTGCA
-185 4 TGGATCATTTCAGTGCA
Enterobacter sp. 638 Ent638_2858 -212 4.1 TTCCCTGTCACGGTGCG
-182 5.2 TGACCCAATATGGTGCA
Yersinia pestis KIM y1607 -123 4.8 AGCACTGAAATGGGGCA
Serratia proteamaculans 568 Spro_3326 -265 4.4 CGCACTGAATTAGGGCG
-243 4.3 TGCACCATAATGATCCC
Position: -220
Score: 5.2
Sequence: TGCACCATTACAGTGCT
Position: -188
Score: 5.2
Sequence: TGCACCATTTAAGTGCA
Locus tag: Spro_4881
Spro_4881 -220 5.2 TGCACCATTACAGTGCT
-188 5.2 TGCACCATTTAAGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Escherichia coli str. K-12 substr. MG1655 b3870 -221 5.9 TGCACCAACATGGTGCT
-189 5.4 AGCACTATATTGGTGCA
Salmonella typhimurium LT2 STM4007 -224 5.5 TGCACCAATGTGGTGCT
-192 5.2 AGCACTATTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03140 -202 5.9 TGCACCAACATGGTGCT
-170 5.4 AGCACTATATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04178 -251 6 TGCACCAAAATGGTGCT
-219 5.2 AGCACTATTTTGGTGCA
Enterobacter sp. 638 Ent638_4096 -237 5.3 CGCACCATTATGGTGCT
-205 5.6 AGCACTATAATGGTGCA
Erwinia amylovora ATCC 49946 EAM_0032 -288 5.1 TGCACCAAAATGGTGAC
-256 5.3 AGCACCAGAATGGTGCG
Yersinia pestis KIM y3804 -384 5.6 TGCACCAAAATAGTGCC
-353 5.5 GGCACCAAAATAGTGCA
Serratia proteamaculans 568 Spro_4881 -220 5.2 TGCACCATTACAGTGCT
-188 5.2 TGCACCATTTAAGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0029 -218 5.3 TGCACCAAACAAGTGCA
-186 5.4 AGCACCAACTTGGTGCT
Edwardsiella tarda EIB202 ETAE_3493 -220 5.5 TGCACCAAGATTGTGCG
-188 5.2 TGCACCATTATGGAGCA
Proteus mirabilis HI4320 PMI2882 -223 5.9 TGCACCAAAATTGTGCA
-189 5.8 TGCACCAAATTTGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0237 -303 5.1 CGCACTAATATTGTGCG
-272 5.9 TGCACCAATATAGTGCA
Position: -29
Score: 5.8
Sequence: TGCACTAAAAAGGTGCA
Locus tag: Spro_4882
Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3869 -38 6.1 TGCACTAAAATGGTGCA
Salmonella typhimurium LT2 STM4006 -39 6.1 TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03143 -40 6 TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04177 -39 6 TGCACTAAATTGGTGCA
Enterobacter sp. 638 Ent638_4097 -38 5.8 TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946 EAM_0031 -40 5.7 TGCACTAAGTTGGTGCA
Yersinia pestis KIM y3805 -29 5.3 TGCACCGAAACTGTGCA
Serratia proteamaculans 568 Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0028 -29 5.2 TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202 ETAE_3494 -28 6.1 TGCACCAAAATAGTGCA
Proteus mirabilis HI4320 PMI2883 -32 6.1 TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0236 -26 5.7 TGCACCAAAAAAGTGCA