Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GntR regulog to Serratia proteamaculans 568

Reference regulog properties
Source regulog: GntR - Enterobacteriales  
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Gluconate utilization
Effector: Gluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Serratia proteamaculans 568
Orthologous TF(s) Spro_4652
Regulated genes 4
Built upon 61 sites [see more]
Predicted regulatory interactions in Serratia proteamaculans 568
Locus tag Position Score Sequence
Position: -131
Score: 5.9
Sequence: ATAAGTTACCGGTAACATTG
Locus tag: Spro_2136
Spro_2136 -131 5.9 ATAAGTTACCGGTAACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gadA
Ortholog function: Gluconate 2-dehydrogenase subunit (EC 1.1.99.3)
Erwinia amylovora ATCC 49946 EAM_0336 -133 5.8 TATTGTTACCGGTAACAGTC
Serratia proteamaculans 568 Spro_2136 -131 5.9 ATAAGTTACCGGTAACATTG
Position: -121
Score: 4.2
Sequence: TCACGTTAAAGGTAACAGCT
Locus tag: Spro_3288
Spro_3288 -121 4.2 TCACGTTAAAGGTAACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnO
Ortholog function: Gluconate 5-dehydrogenase (EC 1.1.1.69)
Escherichia coli str. K-12 substr. MG1655 b4266 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4483 -116 4.3 TcAcGTTAtgcGTAACATTg
Citrobacter koseri ATCC BAA-895 CKO_02793 -39 4.8 TACAGTTACGCGTAACAGCT
Serratia proteamaculans 568 Spro_3288 -120 4.2 TcAcGTTAaaGGTAACAgcT
Position: -169
Score: 4.4
Sequence: AGCTGTTACCTTTAACGTGA
Locus tag: Spro_3289
Spro_3289 -169 4.4 AGCTGTTACCTTTAACGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnR
Ortholog function: L-idonate utilization transcriptional regulator IdnR, LacI family
Escherichia coli str. K-12 substr. MG1655 b4264 -146 3.8 TAtTtcTACtGaTAAgAaTT
-116 3.8 TcAcGTTAtgcGTAACATag
Salmonella typhimurium LT2 STM4481 -116 4.3 TcAcGTTAtgcGTAACATTg
Citrobacter koseri ATCC BAA-895 CKO_02791 -39 4.8 TACAGTTACGCGTAACAGCT
Serratia proteamaculans 568 Spro_3289 -169 4.4 AGCTGTTACCTTTAACGTGA
Position: -185
Score: 5.3
Sequence: GGTTGTTACCGGTATCATGA
Position: -171
Score: 5.4
Sequence: TCATGATACCGGTAACAATG
Locus tag: Spro_4651
Spro_4651 -185 5.3 GGTTGTTACCGGTATCATGA
-171 5.4 TCATGATACCGGTAACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: High-affinity H+/gluconate symporter
Yersinia pestis KIM y3875 -159 6 CCATGTTACCGGTATCATGA
-145 5.1 TCATGATACCGGTAACAAAT
Serratia proteamaculans 568 Spro_4651 -185 5.3 GGTTGTTACCGGTATCATGA
-171 5.4 TCATGATACCGGTAACAATG