Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of UxuR regulog to Serratia proteamaculans 568

Reference regulog properties
Source regulog: UxuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Serratia proteamaculans 568
Orthologous TF(s) No orthologous TFs found
Regulated genes 6
Built upon 44 sites [see more]
Predicted regulatory interactions in Serratia proteamaculans 568
Locus tag Position Score Sequence
Position: 27
Score: 4.9
Sequence: AATGTGGTTAACCAGATG
Locus tag: Spro_1408
Spro_1408 27 4.9 AATGTGGTTAACCAGATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjM
Ortholog function: L-galactonate transcriptional regulator, GntR family
Escherichia coli str. K-12 substr. MG1655 b4357 27 3.9 AATGTGATTAACCAGGTC
Position: -275
Score: 4.5
Sequence: ATCTTGTTATACCAAATT
Locus tag: Spro_3239
Spro_3239 -275 4.5 ATCTTGTTATACCAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeiQ
Ortholog function: paralog of D-mannonate oxidoreductase
Escherichia coli str. K-12 substr. MG1655 b2172 -176 4.1 AATTTATTATACCAATCT
Yersinia pestis KIM y2903 -363 4.3 AtgTTGtTatACCgATTT
-250 3.9 tAtTgGacTtACCAATTT
-92 4.2 AAAcTGGTctAaCAAcTT
Position: -209
Score: 5.2
Sequence: GAATTGGTATACCAACTT
Locus tag: Spro_3599
Spro_3599 -209 5.2 GAATTGGTATACCAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Putative MFS superfamily hexuronate transporter
Yersinia pestis KIM y3232 -217 5.2 ATTTTGGTGAACCAATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1967 -162 5.9 AATTTGGTAAACCAATTT
Position: -174
Score: 5.3
Sequence: AAGTTGGTATACCAATTC
Locus tag: Spro_3600
Spro_3600 -174 5.3 AAGTTGGTATACCAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: periplasmic binding protein/LacI transcriptional regulator
Yersinia pestis KIM y3231 -194 5.4 ATATTGGTTCACCAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -176 6 AAATTGGTTTACCAAATT
Position: -57
Score: 4.5
Sequence: TAAGTGGTATAACAAATC
Locus tag: Spro_4323
Spro_4323 -57 4.5 TAAGTGGTATAACAAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exuR
Ortholog function: exu regulon transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3094 -47 4.7 AAAGTGGTATAACAAATA
Yersinia pestis KIM y3602 -105 4.5 TAAGTGGTATAACAAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0643 -98 4.5 TAAGTGGTATAACAAATC
Edwardsiella tarda EIB202 ETAE_0434 -68 4.2 AAAGTGGTATAACAACTC
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