Propagation of FadR regulog to Escherichia coli O157:H7 str. EC4024
| Source regulog: | FadR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Escherichia coli O157:H7 str. EC4024 |
| Orthologous TF(s) | EscherichcoliO157_010100020862 |
| Regulated genes | 9 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -83
Score: 3.3 Sequence: GGCTGATCGGACTTGTT
Locus tag: EscherichcoliO157_010100004452
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| EscherichcoliO157_010100004452 | -83 | 3.3 | GGCTGATCGGACTTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fabB | ||||
| Ortholog function: 3-oxoacyl-(acyl carrier protein) synthase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2323 | -83 | 3.3 | GGCTGATCGGACTTGTT |
| Salmonella typhimurium LT2 | STM2378 | -84 | 3.3 | GGCTGATCGGACTTGTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00462 | -83 | 3.3 | GGCTGATCGGACTTGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02713 | -83 | 3.8 | GTCTGATCGGACTTGTT |
| Enterobacter sp. 638 | Ent638_2871 | -82 | 3.3 | GGCTGATCGGACTTGTT |
| Erwinia amylovora ATCC 49946 | EAM_2336 | -82 | 3.9 | AGCTGATCGGACTTGTT |
| Yersinia pestis KIM | y1591 | -85 | 3.7 | CGCTGATCGGACTTGTT |
| Serratia proteamaculans 568 | Spro_3368 | -84 | 3.7 | CGCTGATCGGACTTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3063 | -86 | 3.3 | GGCTGATCGGACTTGTT |
| Edwardsiella tarda EIB202 | ETAE_2421 | -126 | 3.7 | ATCTGGTTTTACCAGCG |
| Proteus mirabilis HI4320 | PMI1795 | -89 | 3.3 | TCCTGATCGGACTTGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3184 | -96 | 3.3 | TCCTGATCGGACTTGTT |
|
Position: -43
Score: 5.1 Sequence: ATCAGGTCAGACCACTT
Locus tag: EscherichcoliO157_010100004552
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| EscherichcoliO157_010100004552 | -43 | 5.1 | ATCAGGTCAGACCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadI | ||||
| Ortholog function: FadI component of anaerobic fatty acid oxidation complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2342 | -43 | 5.1 | ATCAGGTCAGACCACTT |
| Salmonella typhimurium LT2 | STM2389 | -42 | 4.8 | ATCAGGTCAGACCACTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00448 | -43 | 5.1 | ATCAGGTCAGACCACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02724 | -44 | 5.1 | ATCAGGTCAGACCACTT |
| Enterobacter sp. 638 | Ent638_2882 | -48 | 5.1 | ATCAGGTCAGACCACTT |
| Yersinia pestis KIM | y1579 | -66 | 5 | ATCAGGTCAGACCTGTT |
| Serratia proteamaculans 568 | Spro_3379 | -56 | 5 | ATCAGGTCAGACCTCTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3079 | -53 | 5 | ATCAGGTCTGACCTGTT |
| Proteus mirabilis HI4320 | PMI1808 | -50 | 5 | ATCAGGTCAGACCTCTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3201 | -81 | 4.7 | ATCAGGTCAGACCTGTC |
|
Position: -86
Score: 4.5 Sequence: AACTCATCGGATCAGTT
Locus tag: EscherichcoliO157_010100004825
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| EscherichcoliO157_010100004825 | -86 | 4.5 | AACTCATCGGATCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iclR | ||||
| Ortholog function: Acetate operon transcriptional repressor, IclR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4018 | -86 | 4.5 | AACTCATCGGATCAGTT |
|
Position: -71
Score: 4.5 Sequence: AAGAGGTCATACCAGTT
Locus tag: EscherichcoliO157_010100006006
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| EscherichcoliO157_010100006006 | -71 | 4.5 | AAGAGGTCATACCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadM | ||||
| Ortholog function: Long-chain acyl-CoA thioesterase FadM (EC=3.1.2.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0443 | -59 | 4.5 | AAGAGGTCATACCAGTT |
| Salmonella typhimurium LT2 | STM0454 | -70 | 3.9 | TAGAGGTCATACCAGTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02717 | -59 | 4.4 | ATGAGGTCATACCAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00405 | -54 | 4.3 | AAGTGGTGTGACCTCTT |
| Enterobacter sp. 638 | Ent638_0910 | -58 | 4.1 | AAGAGGTCATACCAGTC |
| Yersinia pestis KIM | y1033 | -49 | 3.8 | TTGAGGTCCTACCAGTT |
| Serratia proteamaculans 568 | Spro_1101 | -97 | 4.3 | TACAGGTCTTACCAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1154 | -44 | 4.4 | ATCAGGTCGTACCAGTT |
|
Position: -46
Score: 4.9 Sequence: AACTCATCCGACCACAT
Locus tag: EscherichcoliO157_010100012361
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| EscherichcoliO157_010100012361 | -46 | 4.9 | AACTCATCCGACCACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadH | ||||
| Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3081 | -46 | 4.9 | AACTCATCCGACCACAT |
| Salmonella typhimurium LT2 | STM3219 | -46 | 4.9 | AACTCATCCGACCACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04487 | -46 | 4.9 | AACTCATCCGACCACAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03510 | -44 | 4.9 | AACTCATCCGACCACAT |
| Enterobacter sp. 638 | Ent638_3539 | -44 | 4.9 | AACTCATCCGACCACAT |
| Erwinia amylovora ATCC 49946 | EAM_0507 | -31 | 5 | AACTCATCCGACCACTT |
| Yersinia pestis KIM | y3589 | -57 | 4.9 | ATCTCATCCGACCACTT |
| Serratia proteamaculans 568 | Spro_4309 | -61 | 4.9 | ATCTCATCCGACCACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0655 | -36 | 4.4 | GACTCATCAGACCAGTT |
| Proteus mirabilis HI4320 | PMI3702 | -32 | 4.7 | ATCTCATCTGACCAGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3990 | -89 | 4.7 | CACTCATCCGACCACTT |
|
Position: -23
Score: 4.4 Sequence: AGCTGGTATGATGAGTT
Locus tag: EscherichcoliO157_010100013757
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| EscherichcoliO157_010100013757 | -23 | 4.4 | AGCTGGTATGATGAGTT | |
| Supported by regulated orthologs from reference regulons | ||||