Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SdaR regulog to Shigella flexneri 2a str. 2457T

Reference regulog properties
Source regulog: SdaR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: SdaR
Regulation mode: activator
Biological process: Glucarate utilization; Galactarate utilization
Effector: Glycerate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shigella flexneri 2a str. 2457T
Orthologous TF(s) No orthologous TFs found
Regulated genes 2
Built upon 31 sites [see more]
Predicted regulatory interactions in Shigella flexneri 2a str. 2457T
Locus tag Position Score Sequence
Position: -186
Score: 6
Sequence: TTATGTGCATATGCTCAAAA
Locus tag: S3379
S3379 -186 6 TTATGTGCATATGCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: garP
Ortholog function: D-galactarate permease, MFS family
Escherichia coli str. K-12 substr. MG1655 b3127 -186 6 TTATGTGCATATGCTCAAAA
-144 4.5 AAATTAGCATTTGCACAATG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03539 -206 4.7 CTTATGGCATAAGCACAATT
Enterobacter sp. 638 Ent638_3569 -208 5.4 GGTTGTGCATATGCTCAAAT
Position: -250
Score: 4.5
Sequence: CATTGTGCAAATGCTAATTT
Position: -208
Score: 6
Sequence: TTTTGAGCATATGCACATAA
Locus tag: S3380
S3380 -250 4.5 CATTGTGCAAATGCTAATTT
-208 6 TTTTGAGCATATGCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: garD
Ortholog function: D-galactarate dehydratase (EC 4.2.1.42)
Escherichia coli str. K-12 substr. MG1655 b3128 -250 4.5 CATTGTGCAAATGCTAATTT
-208 6 TTTTGAGCATATGCACATAA
Salmonella typhimurium LT2 STM3250 -276 4.8 CATTGTGCAAACGCTCATTA
-233 5.1 TTTTGAGCATACGCCCATGA
Citrobacter koseri ATCC BAA-895 CKO_04527 -223 5.6 TTTTGAGCATTTGCACAACG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03540 -206 4.7 AATTGTGCTTATGCCATAAG
Enterobacter sp. 638 Ent638_3570 -224 5.4 ATTTGAGCATATGCACAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3578 -316 4.6 GTTGGTGCACTTGCCCTATA
-140 4.2 CTTAGGTCAATTGCATAATG