Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of UxuR regulog to Shigella flexneri 2a str. 301

Reference regulog properties
Source regulog: UxuR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Glucuronate utilization
Effector: Glucuronate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shigella flexneri 2a str. 301
Orthologous TF(s) SF4196
Regulated genes 7
Built upon 44 sites [see more]
Predicted regulatory interactions in Shigella flexneri 2a str. 301
Locus tag Position Score Sequence
Position: -62
Score: 4.8
Sequence: GAATTGGTTAACTAATCA
Locus tag: SF1640
SF1640 -62 4.8 GAATTGGTTAACTAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uidA
Ortholog function: beta-D-glucuronidase
Escherichia coli str. K-12 substr. MG1655 b1617 -62 4.8 GAATTGGTTAACTAATCA
-42 4.6 TTAAAGGTTGACCAGTAT
Position: -176
Score: 4.1
Sequence: AATTTATTATACCAATCT
Locus tag: SF2259
SF2259 -176 4.1 AATTTATTATACCAATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeiQ
Ortholog function: paralog of D-mannonate oxidoreductase
Escherichia coli str. K-12 substr. MG1655 b2172 -176 4.1 AATTTATTATACCAATCT
Yersinia pestis KIM y2903 -363 4.3 AtgTTGtTatACCgATTT
-250 3.9 tAtTgGacTtACCAATTT
-92 4.2 AAAcTGGTctAaCAAcTT
Position: -173
Score: 5.4
Sequence: TATTTGGTTGACCAGTTT
Locus tag: SF4196
SF4196 -173 5.4 TATTTGGTTGACCAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuR
Ortholog function: D-glucuronate repressor, GntR family
Escherichia coli str. K-12 substr. MG1655 b4324 -173 5.4 TATTTGGTTGACCAGTTT
Salmonella typhimurium LT2 STM4507 -231 5.9 ATATTGGTAAACCAATAT
-106 5.1 TTGTTGGTTGACCAGTTT
Edwardsiella tarda EIB202 ETAE_1037 -330 5.3 TTTTTGGTTGACCAATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0171 -77 5.7 TTTTTGGTTGACCAATTT
Position: -286
Score: 4.8
Sequence: AAATTGGTCAACCATTGT
Position: -180
Score: 4.5
Sequence: GACGCGGTTAACCAATTT
Locus tag: SF4198
SF4198 -286 4.8 AAATTGGTCAACCATTGT
-180 4.5 GACGCGGTTAACCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655 b4322 -180 5.4 GATGTGGTTAACCAATTT
Salmonella typhimurium LT2 STM3135 -336 5.6 AAATTGGTTGACCAATCA
-149 5.2 GATTTGGTTAGCCAATTT
Yersinia pestis KIM y2902 -510 4.5 AAgTTGtTagACCAgTTT
-352 4 AAATTGGTaAgtCcAaTa
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1093 -109 5.2 TAATTGGTCAATCAATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0170 -77 5.7 TTTTTGGTTGACCAATTT
Position: -71
Score: 5.6
Sequence: ACAATGGTTGACCAATTT
Locus tag: SF4199
SF4199 -71 5.6 ACAATGGTTGACCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntP
Ortholog function: Fructuronate transporter GntP
Escherichia coli str. K-12 substr. MG1655 b4321 -177 5.4 AAATTGGTTAACCACATC
-71 5.6 ACAATGGTTGACCAATTT
Yersinia pestis KIM y3426 -226 5.2 AACTTGGTTAACCAATAC
Edwardsiella tarda EIB202 ETAE_1036 -70 5.1 TTATTGGTCAACCAAAAA
-29 5.8 AAATTGGTTGACCAAATG
Position: -81
Score: 3.9
Sequence: AATGTGATTAACCAGGTC
Locus tag: SF4388
SF4388 -81 3.9 AATGTGATTAACCAGGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjM
Ortholog function: L-galactonate transcriptional regulator, GntR family
Escherichia coli str. K-12 substr. MG1655 b4357 27 3.9 AATGTGATTAACCAGGTC
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