Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Yersinia enterocolitica subsp. enterocolitica 8081

Reference regulog properties
Source regulog: NtrC - Enterobacteriales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia enterocolitica subsp. enterocolitica 8081
Orthologous TF(s) YE0025
Regulated genes 6
Built upon 130 sites [see more]
Predicted regulatory interactions in Yersinia enterocolitica subsp. enterocolitica 8081
Locus tag Position Score Sequence
Position: -29
Score: 5.5
Sequence: TGCACCAAAAATGTGCA
Locus tag: YE0026
YE0026 -29 5.5 TGCACCAAAAATGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Escherichia coli str. K-12 substr. MG1655 b3869 -38 6.1 TGCACTAAAATGGTGCA
Salmonella typhimurium LT2 STM4006 -39 6.1 TGCACTAAAATGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_03143 -40 6 TGCACTAAATTGGTGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04177 -39 6 TGCACTAAATTGGTGCA
Enterobacter sp. 638 Ent638_4097 -38 5.8 TGCACTAAATTAGTGCA
Erwinia amylovora ATCC 49946 EAM_0031 -40 5.7 TGCACTAAGTTGGTGCA
Yersinia pestis KIM y3805 -29 5.3 TGCACCGAAACTGTGCA
Serratia proteamaculans 568 Spro_4882 -29 5.8 TGCACTAAAAAGGTGCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0028 -29 5.2 TGCACCATGCTGGTGCG
Edwardsiella tarda EIB202 ETAE_3494 -28 6.1 TGCACCAAAATAGTGCA
Proteus mirabilis HI4320 PMI2883 -32 6.1 TGCACTAAAATGGTGCA
Photorhabdus luminescens subsp. laumondii TTO1 plu0236 -26 5.7 TGCACCAAAAAAGTGCA
Position: -274
Score: 4.7
Sequence: CGCACTGAAATGGGGCG
Position: -252
Score: 4.9
Sequence: TGCACCACAATGATGCT
Locus tag: YE1318
YE1318 -274 4.7 CGCACTGAAATGGGGCG
-252 4.9 TGCACCACAATGATGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hisJ
Ortholog function: Histidine ABC transporter, substrate-binding component
Escherichia coli str. K-12 substr. MG1655 b2309 -162 5.5 TGCACTATCGTGGTGCA
Salmonella typhimurium LT2 STM2354 -211 4.4 GGAACTATCACGGTGCA
-182 5.1 TGCACCTTTTTGGTGCA
Citrobacter koseri ATCC BAA-895 CKO_00478 -212 4.3 TTAACCATCACGGTGCG
-183 5.8 TGCACCATCATGGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02699 -215 5.3 TGCCCCAAAAGGGTGCA
-185 4 TGGATCATTTCAGTGCA
Enterobacter sp. 638 Ent638_2858 -212 4.1 TTCCCTGTCACGGTGCG
-182 5.2 TGACCCAATATGGTGCA
Yersinia pestis KIM y1607 -123 4.8 AGCACTGAAATGGGGCA
Serratia proteamaculans 568 Spro_3326 -265 4.4 CGCACTGAATTAGGGCG
-243 4.3 TGCACCATAATGATCCC
Position: -204
Score: 4.2
Sequence: TGCACCGTGACTGGGCA
Locus tag: YE1950
YE1950 -204 4.2 TGCACCGTGACTGGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rutA
Ortholog function: Pyrimidine oxygenase
Escherichia coli str. K-12 substr. MG1655 b1012 -168 3.9 TGCACTCTCATCGCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01038 -223 4.1 TGCACCCTGATTGCGCA
-189 3.8 TGCACTGATTTTGACCA
Enterobacter sp. 638 Ent638_1525 -227 4.1 TGCACCGCCATCGCGCA
Serratia proteamaculans 568 Spro_1823 -230 3.9 TGCACCTTTAATGAGCA
Position: -288
Score: 4.7
Sequence: CGCACCGCATTAGTGCG
Locus tag: YE2991
YE2991 -288 4.7 CGCACCGCATTAGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltI
Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component
Yersinia pestis KIM y1189 -278 4.2 TGCCTCTATTTGGTGCG
Serratia proteamaculans 568 Spro_1214 -212 4.8 GGCACCATAAGGGTGCA
-183 5 TGCATTAATTTGGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1314 -300 5.3 CGCACCAAATTGGTGCC
Photorhabdus luminescens subsp. laumondii TTO1 plu1307 -239 4.2 TGCACCAAAAAAATGAT
Position: -263
Score: 5.1
Sequence: CGCACTATTTTGGTGCG
Locus tag: YE3120
YE3120 -263 5.1 CGCACTATTTTGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnK
Ortholog function: nitrogen regulatory protein P-II
Escherichia coli str. K-12 substr. MG1655 b0450 -137 5.2 TGCACTGTCATAGTGCG
Salmonella typhimurium LT2 STM0462 -177 5.2 TGCACCGTCGTGGTGCG
Citrobacter koseri ATCC BAA-895 CKO_02708 -147 5.3 TGCACCGTTATAGTGCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00413 -181 5.3 TGCACCGTTGTGGTGCA
Enterobacter sp. 638 Ent638_0918 -160 5.3 TGCACTGTCATGGTGCG
Erwinia amylovora ATCC 49946 EAM_1004 -209 4.7 TGCATCATTTTAGTGCG
-189 5.1 TGAACTATTTTGGTGCA
Yersinia pestis KIM y1041 -191 5.8 TGCACCAACTTGGTGCG
Serratia proteamaculans 568 Spro_1109 -192 5.3 CGCACCAAAGTAGTGCG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1160 -244 5.8 TGCACCAACTTAGTGCA
Edwardsiella tarda EIB202 ETAE_1003 -152 5.2 TGCACCGTTTTGGTGCT
Proteus mirabilis HI4320 PMI0126 -114 4.7 TGCACTAAGTTAGTGAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3857 -173 5.5 TGCACTAATTCGGTGCA
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