Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NarP regulog to Yersinia enterocolitica subsp. enterocolitica 8081

Reference regulog properties
Source regulog: NarP - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia enterocolitica subsp. enterocolitica 8081
Orthologous TF(s) YE1153
Regulated genes 12
Built upon 125 sites [see more]
Predicted regulatory interactions in Yersinia enterocolitica subsp. enterocolitica 8081
Locus tag Position Score Sequence
Position: -339
Score: 3.9
Sequence: TTACTCTTTAGAGTTA
Locus tag: YE1153
YE1153 -339 3.9 TTACTCTTTAGAGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narP
Ortholog function: Nitrate/nitrite response regulator protein NarP, LuxR family
Escherichia coli str. K-12 substr. MG1655 b2193 -91 4 TACATAAAATGGGGTA
Serratia proteamaculans 568 Spro_3490 -243 4.8 TCCCCCTAAAGGGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1901 -257 4.3 TCACCCTTTAGAGGTA
Edwardsiella tarda EIB202 ETAE_1111 -169 4.1 TTCCTCTTTTGGGTTA
Position: -112
Score: 4.8
Sequence: TACCTCTATAAGGGTA
Locus tag: YE1263
YE1263 -112 4.8 TACCTCTATAAGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Escherichia coli str. K-12 substr. MG1655 b2201 -129 4.6 TACCCCGATCGGGGTA
Salmonella typhimurium LT2 STM2254 -132 4.8 TACCTCTATCGGGGTA
Citrobacter koseri ATCC BAA-895 CKO_00574 -612 4.6 TACCCCAATCGGGGTA
Yersinia pestis KIM y1567 -112 4.8 TACCTCTATAAGGGTA
Serratia proteamaculans 568 Spro_3391 -49 4.9 TACCCCTATTGGAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -86 4.6 TAACCCTTTAGGGTTA
Edwardsiella tarda EIB202 ETAE_2461 -64 4.4 TACCCCGAATGAGTTA
Position: -54
Score: 4.8
Sequence: TACTCATTTGTGGGTA
Locus tag: YE2216
YE2216 -54 4.8 TACTCATTTGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Escherichia coli str. K-12 substr. MG1655 b1256 -55 4.5 TACTCCAATGTAGGTA
Salmonella typhimurium LT2 STM1732 -55 4.7 TACTTCATTGTGGGTA
Citrobacter koseri ATCC BAA-895 CKO_01333 -55 4.5 TACTCCATTGTAGGTA
Yersinia pestis KIM y2044 -43 4.7 TACTCATTTGTAGGTA
Serratia proteamaculans 568 Spro_2674 -28 4.5 TACCCGTAAGTAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -56 4.9 TACCTACTTAGGGGTA
Edwardsiella tarda EIB202 ETAE_1528 -52 3.7 TCACTCAATATGGTTA
Proteus mirabilis HI4320 PMI1350 -59 4.9 TACTTATTAATGGGTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -55 3.8 TTCTAATATATGAGTA
Position: -100
Score: 4.5
Sequence: TACCACCTTAGAGGTA
Locus tag: YE3965
YE3965 -100 4.5 TACCACCTTAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4)
Escherichia coli str. K-12 substr. MG1655 b3365 -101 5.1 TACCCATTAAGGAGTA
Salmonella typhimurium LT2 STM3474 -101 5 TACCCATTAAGAGGTA
Citrobacter koseri ATCC BAA-895 CKO_04789 -101 5.2 TACCTCTTAAGGAGTA
Yersinia pestis KIM y3945 -100 4.5 TACCACCTTAGAGGTA
Serratia proteamaculans 568 Spro_4595 -197 4.5 TACTCCCGAATGGGTA
-101 4.5 TACCACATTAGAGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -100 4.8 TACCCACAAAGAAGTA
Proteus mirabilis HI4320 PMI1479 -134 4.1 TACTACTTTGGTAGTA
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