Propagation of Crp regulog to Buchnera aphidicola str. Sg (Schizaphis graminum)
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Buchnera aphidicola str. Sg (Schizaphis graminum) |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 42 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -334
Score: 3.2 Sequence: AATTTTTATAGTTAGCAATTAA
Position: -303
Score: 3.3 Sequence: AATTTTTATTAAAATAATCTAA
Position: -225
Score: 3.4 Sequence: ATATATTATATATTTTAACTTT
Position: -192
Score: 3.7 Sequence: TTTTTTGTTTTCGATCAATTTT
Position: -50
Score: 3.3 Sequence: TTTTTTTATTTAAATTAATTAA
Position: -45
Score: 3.2 Sequence: TTATTTAAATTAATTAATACTT
Locus tag: BUsg033
|
||||
| BUsg033 | -334 | 3.2 | AATTTTTATAGTTAGCAATTAA | |
| -303 | 3.3 | AATTTTTATTAAAATAATCTAA | ||
| -225 | 3.4 | ATATATTATATATTTTAACTTT | ||
| -192 | 3.7 | TTTTTTGTTTTCGATCAATTTT | ||
| -50 | 3.3 | TTTTTTTATTTAAATTAATTAA | ||
| -45 | 3.2 | TTATTTAAATTAATTAATACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupA | ||||
| Ortholog function: DNA-binding protein HU-alpha (HU-2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4000 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02986 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04382 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT |
| Enterobacter sp. 638 | Ent638_0213 | -179 | 3.5 | AAACGTGATTTAACGCCTGTTT |
| Yersinia pestis KIM | y0499 | -181 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Serratia proteamaculans 568 | Spro_0290 | -181 | 3.4 | AAACGTGATTTAACGCCTCATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0238 | -197 | 3.3 | AAACGTGATTTAAGGCCTGAAA |
| Edwardsiella tarda EIB202 | ETAE_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT |
| Proteus mirabilis HI4320 | PMI2771 | -183 | 3.7 | AAACGTGATTTAGTGCTTGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0492 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA |
|
Position: -28
Score: 3.6 Sequence: ATAAATTACCTAAATAACATTA
Locus tag: BUsg044
|
||||
| BUsg044 | -28 | 3.6 | ATAAATTACCTAAATAACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: acetylornithine deacetylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3957 | -66 | 3.7 | TAGTGTATTTTTATTCATAAAT |
| Salmonella typhimurium LT2 | STM4120 | -66 | 3.9 | TAATGTATTTTTATTCATAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03037 | -27 | 4.3 | TAATGTATTTTTATTCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04246 | -27 | 4 | TATTGTATTTTTATTCAAAATA |
| Enterobacter sp. 638 | Ent638_4029 | -66 | 4.2 | TAGTGTATTTTTATTCACATTT |
| Erwinia amylovora ATCC 49946 | EAM_0137 | -66 | 3.8 | TATTGTATTTTTATTCACTATT |
| Yersinia pestis KIM | y0309 | -223 | 3.6 | TATTTTTATTTATGTCAATAAA |
| Serratia proteamaculans 568 | Spro_4782 | -71 | 4.3 | TATTGTATTTTTATTCACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0191 | -65 | 4 | TATTGTATTTTTATTCAAAATA |
| Edwardsiella tarda EIB202 | ETAE_3483 | -65 | 3.9 | TATTGTATTTTTATTCATAATT |
| Proteus mirabilis HI4320 | PMI3236 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4745 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
|
Position: -157
Score: 3.7 Sequence: TAATGTTATTTAGGTAATTTAT
Position: -122
Score: 3.8 Sequence: GATTATGATGTATTTTAAATAT
Locus tag: BUsg045
|
||||
| BUsg045 | -157 | 3.7 | TAATGTTATTTAGGTAATTTAT | |
| -122 | 3.8 | GATTATGATGTATTTTAAATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Salmonella typhimurium LT2 | STM4121 | -44 | 3.5 | AATTATGAATAAAAATACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03036 | -110 | 4 | ATTTGTGAATAAAAATACATTA |
| Enterobacter sp. 638 | Ent638_4028 | -44 | 3.8 | AAATGTGAATAAAAATACACTA |
| Yersinia pestis KIM | y0310 | -43 | 3.7 | TTTATTGACATAAATAAAAATA |
| Serratia proteamaculans 568 | Spro_4781 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0192 | -159 | 3.5 | TATTTTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3482 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3237 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4744 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -4
Score: 3.6 Sequence: TATTATGAATAATTTTAAAAAA
Locus tag: BUsg047
|
||||
| BUsg047 | -4 | 3.6 | TATTATGAATAATTTTAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argG | ||||
| Ortholog function: Argininosuccinate synthase (EC 6.3.4.5) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3172 | -253 | 4.6 | TATAGTGATCCACGCCACATTT |
| Erwinia amylovora ATCC 49946 | EAM_0139 | -121 | 3.5 | AATAGTGAATAAAAATACAATA |
| Serratia proteamaculans 568 | Spro_4779 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3480 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3239 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4742 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -158
Score: 3.9 Sequence: TTTTGTATTTTTTTTCAAAAAA
Locus tag: BUsg100
|
||||
| BUsg100 | -158 | 3.9 | TTTTGTATTTTTTTTCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: hypothetical protein | ||||
| Enterobacter sp. 638 | Ent638_2642 | -116 | 4 | CAGTGTGACATAGATCAGCAAA |
| Yersinia pestis KIM | y2629 | -78 | 3.8 | AGTTGTGCTATCTATCGCACCA |
| -76 | 3.6 | TTGTGCTATCTATCGCACCAAT | ||
| Serratia proteamaculans 568 | Spro_1608 | -297 | 3.7 | ATGCTTGAAGTGGCTCTCACTT |
| -72 | 4.2 | ACATGTGTGCCACATCACAAAA | ||
| Proteus mirabilis HI4320 | PMI0655 | -71 | 4.7 | CTATGTGATCAGGTTAACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1560 | -74 | 4.4 | ACATGTGATCACATTAACAAAT |
|
Position: -296
Score: 4.2 Sequence: AATTGTGATATTATAAAAAATA
Position: -115
Score: 3.7 Sequence: TATATTGATTAATTTTAAAAAT
Locus tag: BUsg116
|
||||
| BUsg116 | -296 | 4.2 | AATTGTGATATTATAAAAAATA | |
| -115 | 3.7 | TATATTGATTAATTTTAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroH | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1704 | -106 | 4.3 | AGGTGTGACACACCTCGCACTT |
| -64 | 4 | TATCGTGATGCGCATCACTTCC | ||
| Salmonella typhimurium LT2 | STM1347 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01728 | -115 | 4.3 | AGGTGTGAAACGCCTCGCATTT |
| -64 | 4.3 | TATTGTGATGCCCATCACTTCC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02162 | -63 | 4 | TATCGTGATGCGCATCACTTCC |
| Enterobacter sp. 638 | Ent638_1743 | -126 | 3.6 | AGTTATGATCGCTTTCACTCTC |
| -62 | 3.6 | TAAGGTGATGCCCATCACTTCC | ||
| Yersinia pestis KIM | y1928 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC |
| Serratia proteamaculans 568 | Spro_2172 | -135 | 3.9 | TTTTGTGCTTTTTTTAGCGATT |
| -64 | 4.3 | TATTGTGATCGCCATCACTTCC | ||
| Edwardsiella tarda EIB202 | ETAE_1792 | -63 | 4 | TATCGTGATCCCCATCACTTCC |
| Proteus mirabilis HI4320 | PMI1423 | -55 | 3.9 | TATTGTGATCTTAATCACTGGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2630 | -62 | 3.8 | TATTGTAATTTCCATTATCTAT |
|
Position: -4
Score: 4.3 Sequence: AATTATGATTAAAATCACTAAA
Locus tag: BUsg129
|
||||
| BUsg129 | -4 | 4.3 | AATTATGATTAAAATCACTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: folE | ||||
| Ortholog function: GTP cyclohydrolase I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2153 | -101 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Salmonella typhimurium LT2 | STM2193 | -101 | 4 | TTATGTGCGCTACCTCACGCAC |
| Citrobacter koseri ATCC BAA-895 | CKO_00638 | -98 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02591 | -84 | 3.5 | TTCTGTGCGCCACCTCACGCAC |
| Enterobacter sp. 638 | Ent638_2753 | -84 | 3.9 | TTATGTGCGCCACCTCACGCAC |
| Serratia proteamaculans 568 | Spro_1560 | -121 | 4.3 | AATCTTGACCGGGTTCACGTTA |
| Proteus mirabilis HI4320 | PMI0639 | -86 | 4.9 | TAATGTGATTCAGCTCATCTAA |
|
Position: 13
Score: 3.6 Sequence: TAATGTTAATTCCTTTAAACAA
Locus tag: BUsg170
|
||||
| BUsg170 | 13 | 3.6 | TAATGTTAATTCCTTTAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pta | ||||
| Ortholog function: phosphate acetyltransferase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02688 | -95 | 3.8 | AGGCATGATGTTAATCATAAAT |
| Enterobacter sp. 638 | Ent638_2841 | -96 | 3.8 | TGGCATGATGTTAATCATAAAT |
| Serratia proteamaculans 568 | Spro_3317 | -125 | 3.8 | TCACATGATGTTAATCATAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3040 | -95 | 4.2 | AGGTATGATGTTAATCATAAAT |
| Proteus mirabilis HI4320 | PMI1772 | -123 | 3.6 | AAGCATGATGCGTATCATTAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3096 | -121 | 3.6 | TAGCATGATGTTAATCATTTAA |
|
Position: -329
Score: 3.9 Sequence: ATCTGTGATAACATTAATAATA
Locus tag: BUsg188
|
||||
| BUsg188 | -329 | 3.9 | ATCTGTGATAACATTAATAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: thrA | ||||
| Ortholog function: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0002 | -83 | 3.8 | TTTATTGACTTAGGTCACTAAA |
| Salmonella typhimurium LT2 | STM0002 | -103 | 4.2 | GAATGTGATCAATTTAAAAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03385 | -249 | 4.1 | GAATGTGATCAAATTAAAAATT |
| Enterobacter sp. 638 | Ent638_0564 | -252 | 4.4 | AATTGTGATCAAATTAGAAATT |
| Proteus mirabilis HI4320 | PMI0001 | -232 | 3.9 | AAATTTGACATCTCTCTCGCTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0563 | -223 | 4.2 | ATGTTTGACTTTGCGCACAAAT |
|
Position: -179
Score: 4.6 Sequence: TAGTTTGATTTTTATAACATAA
Position: -149
Score: 3.6 Sequence: ATTAGTGCAATAGTTAAAAATA
Locus tag: BUsg189
|
||||
| BUsg189 | -179 | 4.6 | TAGTTTGATTTTTATAACATAA | |
| -149 | 3.6 | ATTAGTGCAATAGTTAAAAATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpt | ||||
| Ortholog function: hypoxanthine phosphoribosyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0125 | -147 | 5.3 | ATGTGTGATCGTCATCACAATT |
| Salmonella typhimurium LT2 | STM0170 | -147 | 5.3 | ATGTGTGATCGTCATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03242 | -135 | 5.3 | AAGTGTGATCGTCATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00133 | -134 | 5.4 | AAGTGTGATCGGAATCACAAAT |
| Enterobacter sp. 638 | Ent638_0673 | -180 | 3.6 | AATTTTGATAGCAATTAATTAT |
| -148 | 5.4 | AAGTGTGATCGGAATCACAAAT | ||
| Proteus mirabilis HI4320 | PMI0160 | -154 | 3.6 | TACTGTAATAAGTAACAAAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0860 | -144 | 4 | AATTCTGATATGCTTTGCAAAA |
|
Position: -218
Score: 3.2 Sequence: TTTTGTTAAAAAGTTAAATAAA
Position: -190
Score: 3.1 Sequence: AAAATTAATTATACTCATAGTT
Position: -165
Score: 3.5 Sequence: TTTATTGATTTTTTTTAGAAAA
Position: -128
Score: 3.2 Sequence: AATTTTTATTTTTGTAGTAAAT
Position: -121
Score: 3.9 Sequence: ATTTTTGTAGTAAATCAAAATT
Position: -102
Score: 3.2 Sequence: ATTATTTAATTATATAAAATTA
Position: -75
Score: 3.2 Sequence: TAATATTACAATAATAATATTT
Locus tag: BUsg199
|
||||
| BUsg199 | -218 | 3.2 | TTTTGTTAAAAAGTTAAATAAA | |
| -190 | 3.1 | AAAATTAATTATACTCATAGTT | ||
| -165 | 3.5 | TTTATTGATTTTTTTTAGAAAA | ||
| -128 | 3.2 | AATTTTTATTTTTGTAGTAAAT | ||
| -121 | 3.9 | ATTTTTGTAGTAAATCAAAATT | ||
| -102 | 3.2 | ATTATTTAATTATATAAAATTA | ||
| -75 | 3.2 | TAATATTACAATAATAATATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0152 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0660 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0747 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0767 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4011 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0659 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2046 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -40
Score: 3.6 Sequence: AAATATAGTATCGATCAAATAT
Locus tag: BUsg258
|
||||
| BUsg258 | -40 | 3.6 | AAATATAGTATCGATCAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lipB | ||||
| Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0630 | -94 | 3.6 | AAGTGTAATTTCCGTCCCCATA |
| Salmonella typhimurium LT2 | STM0635.S | -93 | 4.2 | AAGTGTGATTTTCGTCCCCATA |
| -35 | 3.9 | AGTTGTTATTTTTTTTACGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02528 | -91 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00662 | -97 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Enterobacter sp. 638 | Ent638_1165 | -90 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Yersinia pestis KIM | y1173 | -146 | 4.2 | TATTGTGATTAATCTTATATTG |
|
Position: -40
Score: 4.1 Sequence: ATGTTTGATATTTATCTTATTT
Locus tag: BUsg278
|
||||
| BUsg278 | -40 | 4.1 | ATGTTTGATATTTATCTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glyA | ||||
| Ortholog function: serine hydroxymethyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2551 | -229 | 3.8 | GAATGTGATGAAGTGAAAAATT |
| Proteus mirabilis HI4320 | PMI1867 | -210 | 3.8 | TAGCGAGATGTGCCTCAAAAAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3291 | -178 | 3.8 | TAGCGTAATTTTCATTACACTA |
|
Position: -27
Score: 3.2 Sequence: TTATTTTAATTAGAGCGTATTT
Position: -10
Score: 3.2 Sequence: TATTTTTATTATGCAAAAATTT
Locus tag: BUsg301
|
||||
| BUsg301 | -27 | 3.2 | TTATTTTAATTAGAGCGTATTT | |
| -10 | 3.2 | TATTTTTATTATGCAAAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -181
Score: 3.7 Sequence: AAAAGTGCAAAAACTCAAATAA
Position: 29
Score: 3.6 Sequence: TCTAGTGATTTTTGGAACAAAA
Locus tag: BUsg312
|
||||
| BUsg312 | -181 | 3.7 | AAAAGTGCAAAAACTCAAATAA | |
| 29 | 3.6 | TCTAGTGATTTTTGGAACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1852 | -208 | 3.9 | TAACATGATCAGTGTCAGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02367 | -225 | 3.8 | TTACATGATCAGGGTCGTATTT |
| Yersinia pestis KIM | y2244 | -231 | 4.1 | TAATATGACCTGTGTCTAATTT |
| Proteus mirabilis HI4320 | PMI1157 | -225 | 3.7 | AAGTATGACCTGTGTCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2122 | -234 | 4.2 | TAATTTAATGTTTTTCATAAAA |
|
Position: -105
Score: 4.5 Sequence: TAATTTGAGCCGGTTCACAACT
Locus tag: BUsg360
|
||||
| BUsg360 | -105 | 4.5 | TAATTTGAGCCGGTTCACAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -293
Score: 3.2 Sequence: TTTTTTAACTTGTTGAAAATTT
Position: -219
Score: 3.5 Sequence: TATACTGATTATTATAAAAATT
Position: -201
Score: 3.5 Sequence: AATTATTTTTTTTATCATATTA
Position: -182
Score: 4.3 Sequence: TTATTTTATCTTTTTCAAAATT
Position: -134
Score: 3.2 Sequence: ATTTTTTATTTTAAATACATAC
Position: -98
Score: 3.5 Sequence: ATTTTTAATAATATTCTAAATT
Position: -44
Score: 3.2 Sequence: TATTTTTTAATATTTCATAATT
Locus tag: BUsg393
|
||||
| BUsg393 | -293 | 3.2 | TTTTTTAACTTGTTGAAAATTT | |
| -219 | 3.5 | TATACTGATTATTATAAAAATT | ||
| -201 | 3.5 | AATTATTTTTTTTATCATATTA | ||
| -182 | 4.3 | TTATTTTATCTTTTTCAAAATT | ||
| -134 | 3.2 | ATTTTTTATTTTAAATACATAC | ||
| -98 | 3.5 | ATTTTTAATAATATTCTAAATT | ||
| -44 | 3.2 | TATTTTTTAATATTTCATAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: metK | ||||
| Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2942 | -200 | 3.6 | GAATGAGACACGATTCAAAAAA |
| Salmonella typhimurium LT2 | STM3090 | -200 | 3.9 | CATTGCGACGGCCTTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04317 | -199 | 3.5 | CAACGAGAGTTGATTCAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03375 | -199 | 4.3 | AAATGCGACCGCCATCAAAAAA |
| Enterobacter sp. 638 | Ent638_3346 | -199 | 4.4 | TAATGCGAGCGATATCAAAAAA |
| Proteus mirabilis HI4320 | PMI2095 | -275 | 3.5 | CACTGTGATTCAGTTTTCACAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3683 | -205 | 3.3 | GTTTATACTCGCAATCACATAA |
|
Position: -114
Score: 3.8 Sequence: TTTTTTTATTTTGATAAAACTA
Position: -84
Score: 3.9 Sequence: AATTGTTAATTTAATGACATTA
Locus tag: BUsg397
|
||||
| BUsg397 | -114 | 3.8 | TTTTTTTATTTTGATAAAACTA | |
| -84 | 3.9 | AATTGTTAATTTAATGACATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpiA | ||||
| Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03349 | -82 | 3.9 | TTGTGTGATCTGCATCGCAGGG |
| Enterobacter sp. 638 | Ent638_3333 | -47 | 3.8 | TAATGTGACACCGGTCACAGGG |
| Yersinia pestis KIM | y3302 | -114 | 4.2 | AACTGTGATCTCGCTAGAATTA |
| Edwardsiella tarda EIB202 | ETAE_2950 | -276 | 4 | TTTTGTTATGTATAAAACGTTA |
| Proteus mirabilis HI4320 | PMI2032 | -96 | 3.8 | TAAAATGTTGTGTCTCAAATTT |
|
Position: -198
Score: 3.7 Sequence: TAGCTTAATTTTTTTCAAATAA
Position: -80
Score: 4 Sequence: TTTTATGATGAAAATCATTTAT
Locus tag: BUsg473
|
||||
| BUsg473 | -198 | 3.7 | TAGCTTAATTTTTTTCAAATAA | |
| -80 | 4 | TTTTATGATGAAAATCATTTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspE | ||||
| Ortholog function: cold shock protein E | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0623 | -114 | 4 | TAACGCGACTTTTATCACTTTT |
| Salmonella typhimurium LT2 | STM0629 | -114 | 4.3 | TAACGCGATATTTATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02534 | -21 | 4.3 | TAACGCGATATTTATCACTTTT |
| Enterobacter sp. 638 | Ent638_1159 | -114 | 3.8 | TAACGCGACTTTTGTCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_1116 | -113 | 3.6 | AAAAACGATATTTATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1294 | -113 | 3.9 | TTTAGCGACTTTTATCACTTTT |