Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LsrR regulog to Escherichia coli 53638

Reference regulog properties
Source regulog: LsrR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: SorC
Regulation mode: repressor
Biological process: Quorum sensing; Biofilm formation
Effector: 4,5-dihydroxypentan-2,3-dione
Phylum: Proteobacteria
Propagated regulon:
Target genome Escherichia coli 53638
Orthologous TF(s) Ecol5_01003273
Regulated genes 2
Built upon 19 sites [see more]
Predicted regulatory interactions in Escherichia coli 53638
Locus tag Position Score Sequence
Position: -231
Score: 6.7
Sequence: GAACATATTTAAATCTTTAATGCAATTGTTC
Position: -63
Score: 6.6
Sequence: GAACAAATTAAAAGCAGAAATACATTTGTTC
Locus tag: Ecol5_01003272
Ecol5_01003272 -231 6.7 GAACATATTTAAATCTTTAATGCAATTGTTC
-63 6.6 GAACAAATTAAAAGCAGAAATACATTTGTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrA
Ortholog function: Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component
Enterobacter sp. 638 Ent638_3536 -212 6 GAACTCTTATAAAAATTTAGATCATATGTTC
-46 6.6 GAACATTATTAAATCAAAAAATCATTTGTTC
Escherichia coli str. K-12 substr. MG1655 b1513 -231 6.7 GAACATATTTAAATCTTTAATGCAATTGTTC
-63 6.6 GAACAAATTAAAAGCAGAAATACATTTGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03507 -210 6 GAACTCTTATAAAAATTTAGATCATATGTTC
-43 6.7 GAACATTATTAAATTTAAAAATCATTTGTTC
Photorhabdus luminescens subsp. laumondii TTO1 plu3143 -72 6.8 GAACAATTGTTTTTTAAATAGATAAATGTTC
Salmonella typhimurium LT2 STM4074 -233 6.5 GAACATTTCTAAATCATTAACACAATTGTTC
-67 6.6 GAACAATTTCTTTTTCAAAAAACATTTGTTC
Yersinia pestis KIM y3769 2 6.6 GAACACTTTTAAATTAAAAATATTTTTGTTC
Position: -216
Score: 6.6
Sequence: GAACAAATGTATTTCTGCTTTTAATTTGTTC
Position: -48
Score: 6.7
Sequence: GAACAATTGCATTAAAGATTTAAATATGTTC
Locus tag: Ecol5_01003273
Ecol5_01003273 -216 6.6 GAACAAATGTATTTCTGCTTTTAATTTGTTC
-48 6.7 GAACAATTGCATTAAAGATTTAAATATGTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrR
Ortholog function: Quorum sensing transcriptional repgulator of LsrR, SorC family
Enterobacter sp. 638 Ent638_3537 -201 6.6 GAACAAATGATTTTTTGATTTAATAATGTTC
-35 6 GAACATATGATCTAAATTTTTATAAGAGTTC
Escherichia coli str. K-12 substr. MG1655 b1512 -216 6.6 GAACAAATGTATTTCTGCTTTTAATTTGTTC
-48 6.7 GAACAATTGCATTAAAGATTTAAATATGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03508 -203 6.7 GAACAAATGATTTTTAAATTTAATAATGTTC
-36 6 GAACATATGATCTAAATTTTTATAAGAGTTC
Photorhabdus luminescens subsp. laumondii TTO1 plu3142 -184 6.8 GAACATTTATCTATTTAAAAAACAATTGTTC
Salmonella typhimurium LT2 STM4073 -219 6.6 GAACAAATGTTTTTTGAAAAAGAAATTGTTC
-53 6.5 GAACAATTGTGTTAATGATTTAGAAATGTTC
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