Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PaaX regulog to Escherichia coli 53638

Reference regulog properties
Source regulog: PaaX - Enterobacteriales
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Escherichia coli 53638
Orthologous TF(s) Ecol5_01001021
Regulated genes 2
Built upon 12 sites [see more]
Predicted regulatory interactions in Escherichia coli 53638
Locus tag Position Score Sequence
Position: -52
Score: 8
Sequence: TGATTC-(27)-GAATCG
Locus tag: Ecol5_01001032
Ecol5_01001032 -52 8 TGATTC-(27)-GAATCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: Phenylacetic acid degradation protein paaA
Escherichia coli str. K-12 substr. MG1655 b1388 -270 7.4 TGTTTC-(28)-GAATCA
-52 8 TGATTC-(27)-GAATCG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01469 -270 6.5 TGTTAC-(28)-GAATCA
-52 8.4 TGATTC-(27)-GAATCA
Serratia proteamaculans 568 Spro_3072 -307 5.5 GAATTC-(28)-GTATCA
-53 8.4 TGATTC-(28)-GAATCA
Position: -271
Score: 7.4
Sequence: CGATTC-(27)-GAATCA
Position: -54
Score: 7.4
Sequence: TGATTC-(28)-GAAACA
Locus tag: Ecol5_01001033
Ecol5_01001033 -271 7.4 CGATTC-(27)-GAATCA
-54 7.4 TGATTC-(28)-GAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaZ
Ortholog function: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Escherichia coli str. K-12 substr. MG1655 b1387 -271 7.4 CGATTC-(27)-GAATCA
-54 7.4 TGATTC-(28)-GAAACA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01468 -273 8.4 TGATTC-(27)-GAATCA
-56 6.5 TGATTC-(28)-GTAACA
Serratia proteamaculans 568 Spro_3071 -305 8.4 TGATTC-(28)-GAATCA
-51 5.6 TGATAC-(28)-GAATTC