Regulog PaaX - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	[Other]
Regulation mode:	repressor
Biological process:	Phenylacetic acid degradation
Effector:	Phenylacetyl-CoA
Phylum:	Gammaproteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - [Other]
By effector - Phenylacetyl-CoA
By pathway - Phenylacetic acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Citrobacter koseri ATCC BAA-895
Edwardsiella tarda EIB202
Enterobacter sp. 638
Erwinia amylovora ATCC 49946
Erwinia carotovora subsp. atroseptica SCRI1043
Escherichia coli str. K-12 substr. MG1655	12	2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	12	2
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2
Serratia proteamaculans 568	12	2
Yersinia pestis KIM

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
paaZ	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	* Escherichia coli str. K-12 substr. MG1655 Site: position = -271 score = 7.4424 sequence = CGATTC-(27)-GAATCA Site: position = -54 score = 7.42603 sequence = TGATTC-(28)-GAAACA Gene: b1387: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -273 score = 8.38521 sequence = TGATTC-(27)-GAATCA Site: position = -56 score = 6.46686 sequence = TGATTC-(28)-GTAACA Gene: KPN_01468: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	* Serratia proteamaculans 568 Site: position = -305 score = 8.38521 sequence = TGATTC-(28)-GAATCA Site: position = -51 score = 5.59601 sequence = TGATAC-(28)-GAATTC Gene: Spro_3071: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ	Yersinia pestis KIM	Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ

CRON 2.
paaA	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	* Escherichia coli str. K-12 substr. MG1655 Site: position = -270 score = 7.4424 sequence = TGTTTC-(28)-GAATCA Site: position = -52 score = 7.97697 sequence = TGATTC-(27)-GAATCG Gene: b1388: Phenylacetic acid degradation protein paaA	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -52 score = 8.38521 sequence = TGATTC-(27)-GAATCA Site: position = -270 score = 6.49959 sequence = TGTTAC-(28)-GAATCA Gene: KPN_01469: Phenylacetic acid degradation protein paaA	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	* Serratia proteamaculans 568 Site: position = -53 score = 8.38521 sequence = TGATTC-(28)-GAATCA Site: position = -307 score = 5.54042 sequence = GAATTC-(28)-GTATCA Gene: Spro_3072: Phenylacetic acid degradation protein paaA	Yersinia pestis KIM	Phenylacetic acid degradation protein paaA
paaB	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1389: Phenylacetic acid degradation protein paaB	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01470: Phenylacetic acid degradation protein paaB	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3073: Phenylacetic acid degradation protein paaB	Yersinia pestis KIM	Phenylacetic acid degradation protein paaB
paaC	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1390: Phenylacetic acid degradation protein paaC	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01471: Phenylacetic acid degradation protein paaC	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3074: Phenylacetic acid degradation protein paaC	Yersinia pestis KIM	Phenylacetic acid degradation protein paaC
paaD	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1391: Phenylacetic acid degradation protein paaD	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01472: Phenylacetic acid degradation protein paaD	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3075: Phenylacetic acid degradation protein paaD	Yersinia pestis KIM	Phenylacetic acid degradation protein paaD
paaE	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1392: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01473: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3076: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)	Yersinia pestis KIM	Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaF	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1393: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01474: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3077: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)	Yersinia pestis KIM	Probable enoyl-CoA hydratase paaF (EC 4.2.1.17)
paaG	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1394: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01475: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3078: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)	Yersinia pestis KIM	Probable enoyl-CoA hydratase paaG (EC 4.2.1.17)
paaH	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1395: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01476: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3079: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)	Yersinia pestis KIM	3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-)
paaI	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1396: Phenylacetic acid degradation protein paaI	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01477: Phenylacetic acid degradation protein paaI	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3080: Phenylacetic acid degradation protein paaI	Yersinia pestis KIM	Phenylacetic acid degradation protein paaI
paaJ	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1397: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01478: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3081: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)	Yersinia pestis KIM	Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaK	Citrobacter koseri ATCC BAA-895	Edwardsiella tarda EIB202	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Erwinia carotovora subsp. atroseptica SCRI1043	Escherichia coli str. K-12 substr. MG1655 Gene: b1398: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01479: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Photorhabdus luminescens subsp. laumondii TTO1	Proteus mirabilis HI4320	Salmonella typhimurium LT2	Serratia proteamaculans 568 Gene: Spro_3082: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)	Yersinia pestis KIM	Phenylacetate-coenzyme A ligase (EC 6.2.1.30)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PaaX - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --