Regulog PaaX - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Phylum: | Gammaproteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - [Other]
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | ||
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | ||
| Erwinia amylovora ATCC 49946 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||
| Escherichia coli str. K-12 substr. MG1655 | 12 | 2 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 12 | 2 |
| Photorhabdus luminescens subsp. laumondii TTO1 | ||
| Proteus mirabilis HI4320 | ||
| Salmonella typhimurium LT2 | ||
| Serratia proteamaculans 568 | 12 | 2 |
| Yersinia pestis KIM |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| paaZ |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -271 score = 7.4424 sequence = CGATTC-(27)-GAATCA Site: position = -54 score = 7.42603 sequence = TGATTC-(28)-GAAACA Gene: b1387: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -273 score = 8.38521 sequence = TGATTC-(27)-GAATCA Site: position = -56 score = 6.46686 sequence = TGATTC-(28)-GTAACA Gene: KPN_01468: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
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Serratia proteamaculans 568 Site: position = -305 score = 8.38521 sequence = TGATTC-(28)-GAATCA Site: position = -51 score = 5.59601 sequence = TGATAC-(28)-GAATTC Gene: Spro_3071: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
| CRON 2. | |||||||||||||
| paaA |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -270 score = 7.4424 sequence = TGTTTC-(28)-GAATCA Site: position = -52 score = 7.97697 sequence = TGATTC-(27)-GAATCG Gene: b1388: Phenylacetic acid degradation protein paaA |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -52 score = 8.38521 sequence = TGATTC-(27)-GAATCA Site: position = -270 score = 6.49959 sequence = TGTTAC-(28)-GAATCA Gene: KPN_01469: Phenylacetic acid degradation protein paaA |
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Serratia proteamaculans 568 Site: position = -53 score = 8.38521 sequence = TGATTC-(28)-GAATCA Site: position = -307 score = 5.54042 sequence = GAATTC-(28)-GTATCA Gene: Spro_3072: Phenylacetic acid degradation protein paaA |
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Phenylacetic acid degradation protein paaA |
| paaB |
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Gene: b1389: Phenylacetic acid degradation protein paaB |
Gene: KPN_01470: Phenylacetic acid degradation protein paaB |
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Gene: Spro_3073: Phenylacetic acid degradation protein paaB |
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Phenylacetic acid degradation protein paaB |
| paaC |
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Gene: b1390: Phenylacetic acid degradation protein paaC |
Gene: KPN_01471: Phenylacetic acid degradation protein paaC |
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Gene: Spro_3074: Phenylacetic acid degradation protein paaC |
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Phenylacetic acid degradation protein paaC |
| paaD |
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Gene: b1391: Phenylacetic acid degradation protein paaD |
Gene: KPN_01472: Phenylacetic acid degradation protein paaD |
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Gene: Spro_3075: Phenylacetic acid degradation protein paaD |
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Phenylacetic acid degradation protein paaD |
| paaE |
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Gene: b1392: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
Gene: KPN_01473: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
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Gene: Spro_3076: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
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Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-) |
| paaF |
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Gene: b1393: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17) |
Gene: KPN_01474: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17) |
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Gene: Spro_3077: Probable enoyl-CoA hydratase paaF (EC 4.2.1.17) |
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Probable enoyl-CoA hydratase paaF (EC 4.2.1.17) |
| paaG |
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Gene: b1394: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17) |
Gene: KPN_01475: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17) |
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Gene: Spro_3078: Probable enoyl-CoA hydratase paaG (EC 4.2.1.17) |
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Probable enoyl-CoA hydratase paaG (EC 4.2.1.17) |
| paaH |
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Gene: b1395: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-) |
Gene: KPN_01476: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-) |
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Gene: Spro_3079: 3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-) |
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3-hydroxyacyl-CoA dehydrogenase PaaH (EC 1.1.1.-) |
| paaI |
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Gene: b1396: Phenylacetic acid degradation protein paaI |
Gene: KPN_01477: Phenylacetic acid degradation protein paaI |
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Gene: Spro_3080: Phenylacetic acid degradation protein paaI |
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Phenylacetic acid degradation protein paaI |
| paaJ |
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Gene: b1397: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
Gene: KPN_01478: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
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Gene: Spro_3081: Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
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Acetyl-CoA acetyltransferase (EC 2.3.1.9); Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) |
| paaK |
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Gene: b1398: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
Gene: KPN_01479: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
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Gene: Spro_3082: Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |