Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of DeoR regulog to Escherichia coli str. K-12 substr. MG1655

Reference regulog properties
Source regulog: DeoR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Deoxyribonucleoside utilization
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli str. K-12 substr. MG1655
Orthologous TF(s) b0840
Regulated genes 4
Built upon 34 sites [see more]
Predicted regulatory interactions in Escherichia coli str. K-12 substr. MG1655
Locus tag Position Score Sequence
Position: -247
Score: 4.5
Sequence: TGTTACTCTGCTTACA
Locus tag: b0411
b0411 -247 4.5 TGTTACTCTGCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tsx
Ortholog function: nucleoside-specific channel-forming protein
Escherichia coli str. K-12 substr. MG1655 b0411 -247 4.5 TGTTACTCTGCTTACA
Salmonella typhimurium LT2 STM0413 -248 4.4 TGTTGCCCTACTGACA
Erwinia amylovora ATCC 49946 EAM_2589 -215 4.9 TGTGATAAAAATCACA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3796 -169 4.7 TGTGATTAAAATCACA
Position: -180
Score: 4.4
Sequence: TGTTAGCACATTTACA
Locus tag: b2393
b2393 -180 4.4 TGTTAGCACATTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: nucleoside transporter, NUP family
Escherichia coli str. K-12 substr. MG1655 b2393 -180 4.4 TGTTAGCACATTTACA
Position: -163
Score: 4.9
Sequence: TGTTATCCACATCACA
Position: -78
Score: 4.6
Sequence: TGATAGAATCCCATCA
Locus tag: b2964
b2964 -163 4.9 TGTTATCCACATCACA
-78 4.6 TGATAGAATCCCATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupG
Ortholog function: nucleoside transporter, MFS family
Escherichia coli str. K-12 substr. MG1655 b2964 -163 4.9 TGTTATCCACATCACA
-78 4.6 TGATAGAATCCCATCA
Salmonella typhimurium LT2 STM3113 -78 4.6 TGATAGAATCACACCA
Citrobacter koseri ATCC BAA-895 CKO_04339 -78 4.6 TGATAGAATCACATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03396 -46 4.8 TGTTATTTTAAAAACA
Enterobacter sp. 638 Ent638_3369 -46 4.5 TGTTTACAAAACAACA
Position: -60
Score: 6
Sequence: TGTTAGAATACTAACA
Locus tag: b4381
b4381 -60 6 TGTTAGAATACTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: deoxyribose-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655 b4381 -60 6 TGTTAGAATACTAACA
Salmonella typhimurium LT2 STM4567 -44 5.6 TGTTAGAATATTAACA
Citrobacter koseri ATCC BAA-895 CKO_03410 -45 6 TGTTAGAATACTAACA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04837 -246 5.7 TGTTAGAATTATCACA
-69 5.4 TGTTACAATAGTAACA
Enterobacter sp. 638 Ent638_0541 -62 5.9 TGTTAGAATACTCACA
Erwinia amylovora ATCC 49946 EAM_0615 -230 4.9 TGTGATAATTCTAACA
-78 5.7 TGTTATAATCCTCACA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0727 -185 5.4 TGTTGAAATAATCACA
Edwardsiella tarda EIB202 ETAE_0486 -104 5.3 TGTTCAAATAATCACA
Proteus mirabilis HI4320 PMI2416 -302 4.3 TGTGATTCTGATCACA
-259 4 TTTTATTATTGTGACA