Propagation of NtrC regulog to Escherichia coli O157:H7 str. EC4042
| Source regulog: | NtrC - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Escherichia coli O157:H7 str. EC4042 |
| Orthologous TF(s) | EschercoliO157_010100022218 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -162
Score: 5.5 Sequence: TGCACTATCGTGGTGCA
Locus tag: EschercoliO157_010100011290
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| EschercoliO157_010100011290 | -162 | 5.5 | TGCACTATCGTGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hisJ | ||||
| Ortholog function: Histidine ABC transporter, substrate-binding component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2309 | -162 | 5.5 | TGCACTATCGTGGTGCA |
| Salmonella typhimurium LT2 | STM2354 | -211 | 4.4 | GGAACTATCACGGTGCA |
| -182 | 5.1 | TGCACCTTTTTGGTGCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00478 | -212 | 4.3 | TTAACCATCACGGTGCG |
| -183 | 5.8 | TGCACCATCATGGTGCG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02699 | -215 | 5.3 | TGCCCCAAAAGGGTGCA |
| -185 | 4 | TGGATCATTTCAGTGCA | ||
| Enterobacter sp. 638 | Ent638_2858 | -212 | 4.1 | TTCCCTGTCACGGTGCG |
| -182 | 5.2 | TGACCCAATATGGTGCA | ||
| Yersinia pestis KIM | y1607 | -123 | 4.8 | AGCACTGAAATGGGGCA |
| Serratia proteamaculans 568 | Spro_3326 | -265 | 4.4 | CGCACTGAATTAGGGCG |
| -243 | 4.3 | TGCACCATAATGATCCC | ||
|
Position: -225
Score: 3.9 Sequence: TGCACTCTCATCGCGCA
Locus tag: EschercoliO157_010100014309
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| EschercoliO157_010100014309 | -225 | 3.9 | TGCACTCTCATCGCGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rutA | ||||
| Ortholog function: Pyrimidine oxygenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1012 | -168 | 3.9 | TGCACTCTCATCGCGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01038 | -223 | 4.1 | TGCACCCTGATTGCGCA |
| -189 | 3.8 | TGCACTGATTTTGACCA | ||
| Enterobacter sp. 638 | Ent638_1525 | -227 | 4.1 | TGCACCGCCATCGCGCA |
| Serratia proteamaculans 568 | Spro_1823 | -230 | 3.9 | TGCACCTTTAATGAGCA |
|
Position: -47
Score: 5.6 Sequence: CGCACCAACATGGTGCG
Locus tag: EschercoliO157_010100018701
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| EschercoliO157_010100018701 | -47 | 5.6 | CGCACCAACATGGTGCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: potG | ||||
| Ortholog function: Putrescine ABC transporter, ATP-binding component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0855 | -47 | 5.4 | CGCACCATTATGGTGCG |
| Citrobacter koseri ATCC BAA-895 | CKO_02252 | -53 | 4.6 | CGCACTTTTATGGTGCG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00886 | -39 | 5.2 | AGCACCAGGATGGTGCA |
| Enterobacter sp. 638 | Ent638_1369 | -53 | 4.8 | CGCACCGAAAGGGTGCG |
|
Position: -38
Score: 6.1 Sequence: TGCACTAAAATGGTGCA
Locus tag: EschercoliO157_010100022213
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| EschercoliO157_010100022213 | -38 | 6.1 | TGCACTAAAATGGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntrB | ||||
| Ortholog function: Nitrogen regulation protein NR(II) (EC 2.7.3.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3869 | -38 | 6.1 | TGCACTAAAATGGTGCA |
| Salmonella typhimurium LT2 | STM4006 | -39 | 6.1 | TGCACTAAAATGGTGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_03143 | -40 | 6 | TGCACTAAATTGGTGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04177 | -39 | 6 | TGCACTAAATTGGTGCA |
| Enterobacter sp. 638 | Ent638_4097 | -38 | 5.8 | TGCACTAAATTAGTGCA |
| Erwinia amylovora ATCC 49946 | EAM_0031 | -40 | 5.7 | TGCACTAAGTTGGTGCA |
| Yersinia pestis KIM | y3805 | -29 | 5.3 | TGCACCGAAACTGTGCA |
| Serratia proteamaculans 568 | Spro_4882 | -29 | 5.8 | TGCACTAAAAAGGTGCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0028 | -29 | 5.2 | TGCACCATGCTGGTGCG |
| Edwardsiella tarda EIB202 | ETAE_3494 | -28 | 6.1 | TGCACCAAAATAGTGCA |
| Proteus mirabilis HI4320 | PMI2883 | -32 | 6.1 | TGCACTAAAATGGTGCA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0236 | -26 | 5.7 | TGCACCAAAAAAGTGCA |
|
Position: -148
Score: 4.1 Sequence: TGCACCAAAACTGCACT
Position: -127
Score: 3.5 Sequence: TGCACAAATGTTGATCA
Locus tag: EschercoliO157_010100022707
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| EschercoliO157_010100022707 | -148 | 4.1 | TGCACCAAAACTGCACT | |
| -127 | 3.5 | TGCACAAATGTTGATCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ddpX | ||||
| Ortholog function: D-alanyl-D-alanine dipeptidase (EC 3.4.13.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1488 | -148 | 4.1 | TGCACCAAAACTGCACT |
| -127 | 3.5 | TGCACAAATGTTGATCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01525 | -151 | 3.5 | TGCACAAATGTTGATCA |
|
Position: -214
Score: 5.1 Sequence: AGCACCAAAAGAGTGCA
Locus tag: EschercoliO157_010100031245
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| EschercoliO157_010100031245 | -214 | 5.1 | AGCACCAAAAGAGTGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltI | ||||
| Ortholog function: Glutamate-aspartate ABC transporter, substrate-binding component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0655 | -87 | 4.4 | TGCACAATAAAGTTGCA |