Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AllR regulog to Escherichia coli O157:H7 str. EC4042

Reference regulog properties
Source regulog: AllR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor
Biological process: Allantoin utilization
Effector: Allantoin
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli O157:H7 str. EC4042
Orthologous TF(s) EschercoliO157_010100015348
Regulated genes 3
Built upon 6 sites [see more]
Predicted regulatory interactions in Escherichia coli O157:H7 str. EC4042
Locus tag Position Score Sequence
Position: -37
Score: 6.7
Sequence: TTGGAAAATTTTTCCAA
Locus tag: EschercoliO157_010100015343
EschercoliO157_010100015343 -37 6.7 TTGGAAAATTTTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcl
Ortholog function: glyoxylate carboligase
Escherichia coli str. K-12 substr. MG1655 b0507 -37 6.7 TTGGAAAAATTTTCCAA
Salmonella typhimurium LT2 STM0517 -37 6.4 TTGGAAACTTTTTCCAA
Position: -122
Score: 6.6
Sequence: TTGGAAAAATATTCCAA
Locus tag: EschercoliO157_010100015353
EschercoliO157_010100015353 -122 6.6 TTGGAAAAATATTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: allA
Ortholog function: ureidoglycolate hydrolase
Escherichia coli str. K-12 substr. MG1655 b0505 -122 6.6 TTGGAAAAATATTCCAA
Salmonella typhimurium LT2 STM0515 -121 6.6 TTGGAAAAATATTCCAA
Position: -124
Score: 6.6
Sequence: TTGGAATATTTTTCCAA
Locus tag: EschercoliO157_010100015358
EschercoliO157_010100015358 -124 6.6 TTGGAATATTTTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: allS
Ortholog function: DNA-binding transcriptional activator of the allD operon
Escherichia coli str. K-12 substr. MG1655 b0504 -124 6.6 TTGGAATATTTTTCCAA
Salmonella typhimurium LT2 STM0514 -122 6.6 TTGGAATATTTTTCCAA
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