Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NikR regulog to Escherichia coli E110019

Reference regulog properties
Source regulog: NikR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Escherichia coli E110019
Orthologous TF(s) EcolE1_01004665, EcolE1_01001911, EcolE1_01004424
Regulated genes 3
Built upon 9 sites [see more]
Predicted regulatory interactions in Escherichia coli E110019
Locus tag Position Score Sequence
Position: -65
Score: 8
Sequence: GTATGACGAATACTTAAAATCGTCATAC
Locus tag: EcolE1_01001906
EcolE1_01001906 -65 8 GTATGACGAATACTTAAAATCGTCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: nickel ABC transporter, periplasmic nickel-binding protein
Escherichia coli str. K-12 substr. MG1655 b3476 -65 8 GTATGACGAATACTTAAAATCGTCATAC
Citrobacter koseri ATCC BAA-895 CKO_04926 -207 8 GTATGATGAATCTTTAGAATCGTCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03850 -52 8 GTATGATGAATCACTAAAATCGTCATAC
Enterobacter sp. 638 Ent638_1834 -64 7.9 GTATGATGAATTATTAGAATCGTCACAC
Edwardsiella tarda EIB202 ETAE_1379 -59 7.7 GTATGCAGAATTTATAAAATCATCATAC
Position: -65
Score: 8
Sequence: GTATGACGAATACTTAAAATCGTCATAC
Locus tag: EcolE1_01004419
EcolE1_01004419 -65 8 GTATGACGAATACTTAAAATCGTCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: nickel ABC transporter, periplasmic nickel-binding protein
Escherichia coli str. K-12 substr. MG1655 b3476 -65 8 GTATGACGAATACTTAAAATCGTCATAC
Citrobacter koseri ATCC BAA-895 CKO_04926 -207 8 GTATGATGAATCTTTAGAATCGTCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03850 -52 8 GTATGATGAATCACTAAAATCGTCATAC
Enterobacter sp. 638 Ent638_1834 -64 7.9 GTATGATGAATTATTAGAATCGTCACAC
Edwardsiella tarda EIB202 ETAE_1379 -59 7.7 GTATGCAGAATTTATAAAATCATCATAC
Position: -65
Score: 8
Sequence: GTATGACGAATACTTAAAATCGTCATAC
Locus tag: EcolE1_01004660
EcolE1_01004660 -65 8 GTATGACGAATACTTAAAATCGTCATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: nickel ABC transporter, periplasmic nickel-binding protein
Escherichia coli str. K-12 substr. MG1655 b3476 -65 8 GTATGACGAATACTTAAAATCGTCATAC
Citrobacter koseri ATCC BAA-895 CKO_04926 -207 8 GTATGATGAATCTTTAGAATCGTCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03850 -52 8 GTATGATGAATCACTAAAATCGTCATAC
Enterobacter sp. 638 Ent638_1834 -64 7.9 GTATGATGAATTATTAGAATCGTCACAC
Edwardsiella tarda EIB202 ETAE_1379 -59 7.7 GTATGCAGAATTTATAAAATCATCATAC
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