Propagation of NarP regulog to Escherichia coli E110019
| Source regulog: | NarP - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrate; Nitrite |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Escherichia coli E110019 |
| Orthologous TF(s) | EcolE1_01001207 |
| Regulated genes | 26 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -110
Score: 4.7 Sequence: TAACCCAAAATGGGTA
Locus tag: EcolE1_01000017
|
||||
| EcolE1_01000017 | -110 | 4.7 | TAACCCAAAATGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1587 | -92 | 4.7 | TAACCCAAAATGGGTA |
| Salmonella typhimurium LT2 | STM1499 | -95 | 5 | TACTCCCAAAGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01581 | -93 | 4.8 | TACCTATAAGGGGTTA |
| -20 | 3.8 | TAACTATAATGGAGTG | ||
| Serratia proteamaculans 568 | Spro_1687 | -143 | 4.3 | TACCCACTTCTGAGTA |
|
Position: -141
Score: 4.3 Sequence: TACCGCTATTGAGGTA
Locus tag: EcolE1_01000155
|
||||
| EcolE1_01000155 | -141 | 4.3 | TACCGCTATTGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1474 | -141 | 4.3 | TACCGCTATTGAGGTA |
| Salmonella typhimurium LT2 | STM1570 | -188 | 4.1 | TACCTCCCTGGAGTTA |
|
Position: -286
Score: 4.5 Sequence: TAACTCTAAAGTGGTA
Locus tag: EcolE1_01000920
|
||||
| EcolE1_01000920 | -286 | 4.5 | TAACTCTAAAGTGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4070 | -175 | 4.5 | TAACTCTAAAGTGGTA |
| Salmonella typhimurium LT2 | STM4277 | -177 | 4.5 | TAACTCTAAAGTGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03814 | -180 | 4.5 | TAACTCTAAAGTGGTA |
|
Position: -101
Score: 4.7 Sequence: TACCTATAAAGGAGCA
Locus tag: EcolE1_01000999
|
||||
| EcolE1_01000999 | -101 | 4.7 | TACCTATAAAGGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdA | ||||
| Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4154 | -101 | 4.7 | TACCTATAAAGGAGCA |
| Salmonella typhimurium LT2 | STM4343 | -100 | 4.7 | TACCCATAAAGGAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_03678 | -60 | 4.7 | TACCTATAAAGGAGCA |
|
Position: -91
Score: 4 Sequence: TACATAAAATGGGGTA
Locus tag: EcolE1_01001207
|
||||
| EcolE1_01001207 | -91 | 4 | TACATAAAATGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narP | ||||
| Ortholog function: Nitrate/nitrite response regulator protein NarP, LuxR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2193 | -91 | 4 | TACATAAAATGGGGTA |
| Serratia proteamaculans 568 | Spro_3490 | -243 | 4.8 | TCCCCCTAAAGGGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1901 | -257 | 4.3 | TCACCCTTTAGAGGTA |
| Edwardsiella tarda EIB202 | ETAE_1111 | -169 | 4.1 | TTCCTCTTTTGGGTTA |
|
Position: -129
Score: 4.6 Sequence: TACCCCGATCGGGGTA
Locus tag: EcolE1_01001222
|
||||
| EcolE1_01001222 | -129 | 4.6 | TACCCCGATCGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapF | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -129 | 4.6 | TACCCCGATCGGGGTA |
| Salmonella typhimurium LT2 | STM2261 | -132 | 4.8 | TACCTCTATCGGGGTA |
| Yersinia pestis KIM | y1442 | -158 | 4.3 | TACTCATTATTCGGTA |
| Serratia proteamaculans 568 | Spro_3488 | -322 | 4.7 | TACCCCTTTAGGGGGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1898 | -111 | 4.4 | TACCTCTAAAGGGTGA |
| Edwardsiella tarda EIB202 | ETAE_1114 | -156 | 3.9 | TAACCCAAAAGAGGAA |
|
Position: -104
Score: 4.3 Sequence: TACCTGATAGTGGGTA
Locus tag: EcolE1_01001299
|
||||
| EcolE1_01001299 | -104 | 4.3 | TACCTGATAGTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfbV | ||||
| Ortholog function: Predicted membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2295 | -104 | 4.3 | TACCTGATAGTGGGTA |
| Salmonella typhimurium LT2 | STM2336 | -104 | 4.3 | TACCTGATAGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00500 | -105 | 4.3 | TACCTGATAGTGGGTA |
|
Position: -22
Score: 4.2 Sequence: TACTTTTCAAGGAGTA
Locus tag: EcolE1_01001482
|
||||
| EcolE1_01001482 | -22 | 4.2 | TACTTTTCAAGGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: talA | ||||
| Ortholog function: Transaldolase (EC 2.2.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2464 | -22 | 4.2 | TACTTTTCAAGGAGTA |
| Salmonella typhimurium LT2 | STM2473 | -22 | 4.2 | TACTTTTCAAGGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00330 | -22 | 4.2 | TACTTTTCAAGGAGTA |
|
Position: -101
Score: 5.2 Sequence: TACCCCTTAAGGAGTA
Locus tag: EcolE1_01001798
|
||||
| EcolE1_01001798 | -101 | 5.2 | TACCCCTTAAGGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -101 | 5.1 | TACCCATTAAGGAGTA |
| Salmonella typhimurium LT2 | STM3474 | -101 | 5 | TACCCATTAAGAGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -101 | 5.2 | TACCTCTTAAGGAGTA |
| Yersinia pestis KIM | y3945 | -100 | 4.5 | TACCACCTTAGAGGTA |
| Serratia proteamaculans 568 | Spro_4595 | -197 | 4.5 | TACTCCCGAATGGGTA |
| -101 | 4.5 | TACCACATTAGAGGTA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -100 | 4.8 | TACCCACAAAGAAGTA |
| Proteus mirabilis HI4320 | PMI1479 | -134 | 4.1 | TACTACTTTGGTAGTA |
|
Position: -31
Score: 4.6 Sequence: TACCTCGAAGGGAGCA
Locus tag: EcolE1_01002250
|
||||
| EcolE1_01002250 | -31 | 4.6 | TACCTCGAAGGGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase maturation | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -31 | 4.6 | TACCTCGAAGGGAGCA |
| Salmonella typhimurium LT2 | STM3872 | -30 | 4.5 | TACCTCGAAGTGAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -30 | 4.6 | TACCTCGAAGGGAGCA |
| Serratia proteamaculans 568 | Spro_0001 | -33 | 4.6 | TACCTCCTCAGGGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -33 | 4.3 | TACCTCTGAAAAGGTA |
| Edwardsiella tarda EIB202 | ETAE_3526 | -156 | 4.4 | TACCTCCTGGGGGGTA |
|
Position: -212
Score: 4.5 Sequence: TACCTCTCTGGCGGTA
Locus tag: EcolE1_01002329
|
||||
| EcolE1_01002329 | -212 | 4.5 | TACCTCTCTGGCGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0873 | -143 | 4.5 | TACCTCTCTGGCGGTA |
|
Position: -90
Score: 3.9 Sequence: TACCTCACAAAGGTTA
Locus tag: EcolE1_01002528
|
||||
| EcolE1_01002528 | -90 | 3.9 | TACCTCACAAAGGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: modA | ||||
| Ortholog function: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0763 | -90 | 3.9 | TACCTCACAAAGGTTA |
| Salmonella typhimurium LT2 | STM0781 | -91 | 4.2 | TAATCGTTAATGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02372 | -90 | 4 | TAACCTCAATTGGGTA |
|
Position: -118
Score: 4.5 Sequence: TACTCATTAATGAGCA
Locus tag: EcolE1_01002681
|
||||
| EcolE1_01002681 | -118 | 4.5 | TACTCATTAATGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norV | ||||
| Ortholog function: Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2710 | -118 | 4.6 | TACTCATTAATGGGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_04064 | -118 | 4.2 | TACCATTTTATGAGTA |
|
Position: -79
Score: 3.7 Sequence: TGCTACGTAAGGGTTA
Locus tag: EcolE1_01002840
|
||||
| EcolE1_01002840 | -79 | 3.7 | TGCTACGTAAGGGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4209 | -79 | 3.7 | TGCTACGTAAGGGTTA |
| Salmonella typhimurium LT2 | STM4399 | -78 | 3.9 | CACCCCGAAAGAGTTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03623 | -78 | 3.9 | TGACCCGAAAGGGTTA |
| Yersinia pestis KIM | y0652 | -108 | 4.4 | TACCCACTTGGAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3606 | -81 | 4.8 | TACCTCGTAAGCGGTA |
|
Position: -55
Score: 4.5 Sequence: TACTCCAATGTAGGTA
Locus tag: EcolE1_01002946
|
||||
| EcolE1_01002946 | -55 | 4.5 | TACTCCAATGTAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -55 | 4.5 | TACTCCAATGTAGGTA |
| Salmonella typhimurium LT2 | STM1732 | -55 | 4.7 | TACTTCATTGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -55 | 4.5 | TACTCCATTGTAGGTA |
| Yersinia pestis KIM | y2044 | -43 | 4.7 | TACTCATTTGTAGGTA |
| Serratia proteamaculans 568 | Spro_2674 | -28 | 4.5 | TACCCGTAAGTAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -56 | 4.9 | TACCTACTTAGGGGTA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -52 | 3.7 | TCACTCAATATGGTTA |
| Proteus mirabilis HI4320 | PMI1350 | -59 | 4.9 | TACTTATTAATGGGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -55 | 3.8 | TTCTAATATATGAGTA |
|
Position: -215
Score: 4.7 Sequence: TACCCAGAAGTGAGTA
Locus tag: EcolE1_01002961
|
||||
| EcolE1_01002961 | -215 | 4.7 | TACCCAGAAGTGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -215 | 4.7 | TACCCAGAAGTGAGTA |
| Salmonella typhimurium LT2 | STM1749 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Yersinia pestis KIM | y2023 | -260 | 4 | TACCTAAGAATAGTTA |
| Serratia proteamaculans 568 | Spro_2704 | -252 | 4 | TACCCAAGAGTAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -289 | 4 | CACCCACAAATAGGTA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -239 | 4.4 | TACCCAAGAATGAGTA |
|
Position: -158
Score: 4.3 Sequence: TTATCCTAAAGGGGTA
Locus tag: EcolE1_01002974
|
||||
| EcolE1_01002974 | -158 | 4.3 | TTATCCTAAAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1224 | -158 | 4.3 | TTATCCTAAAGGGGTA |
| Salmonella typhimurium LT2 | STM1764 | -159 | 4.3 | TCCTCCCAAAGGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01301 | -158 | 4.6 | TCCTCCTTAAGGGGTA |
|
Position: -236
Score: 4.1 Sequence: TACCCGGAAAGAGTTA
Locus tag: EcolE1_01002975
|
||||
| EcolE1_01002975 | -236 | 4.1 | TACCCGGAAAGAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1223 | -236 | 4.1 | TACCCGGAAAGAGTTA |
| Salmonella typhimurium LT2 | STM1765 | -236 | 4.2 | TACCTATAACGAGTTA |
| -126 | 4 | TACTCATTAAGGGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01299 | -392 | 4.2 | TACCTATAACGAGTTA |
| -282 | 4.5 | TACTCACTAAGGGGCA | ||
|
Position: -228
Score: 4 Sequence: TTACCCATAGTGAGTA
Locus tag: EcolE1_01002976
|
||||
| EcolE1_01002976 | -228 | 4 | TTACCCATAGTGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narX | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1222 | -228 | 4 | TTACCCATAGTGAGTA |
| -118 | 3.8 | TAACTCTTTCCGGGTA | ||
| Salmonella typhimurium LT2 | STM1766 | -230 | 4.3 | TTACCCTTAATGAGTA |
| -120 | 4.5 | TAACTCGTTATAGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01297 | -249 | 4.4 | TGCCCCTTAGTGAGTA |
| -139 | 4.5 | TAACTCGTTATAGGTA | ||
| Serratia proteamaculans 568 | Spro_2899 | -138 | 4.7 | TACTTCGTTAGAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2029 | -217 | 4.2 | CACTCCTTAATGAGTA |
| -106 | 4.7 | TACTCACTAGTGGGTA | ||
| Proteus mirabilis HI4320 | PMI3569 | -73 | 4.5 | TACTCCCTTTGGAGTA |
|
Position: -180
Score: 3.4 Sequence: TACCGAACAATAATTA
Locus tag: EcolE1_01003707
|
||||
| EcolE1_01003707 | -180 | 3.4 | TACCGAACAATAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -180 | 3.4 | TACCGAACAATAATTA |
| Salmonella typhimurium LT2 | STM0964 | -161 | 4.6 | TACCCTATTAGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -166 | 5.2 | TACCCCTTTGGGGGTA |
|
Position: -331
Score: 4.6 Sequence: TAACTCATAATGGGTA
Locus tag: EcolE1_01003909
|
||||
| EcolE1_01003909 | -331 | 4.6 | TAACTCATAATGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fixA | ||||
| Ortholog function: Flavoprotein involved in anaerobic carnitine metabolism | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0041 | -365 | 4.6 | TAACTCATAATGGGTA |
| Salmonella typhimurium LT2 | STM0075 | -365 | 4 | TAACTCATGATGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03341 | -330 | 4.6 | TAACTCATAATGGGTA |
|
Position: -296
Score: 4.4 Sequence: TACCCATTATGAGTTA
Locus tag: EcolE1_01003910
|
||||
| EcolE1_01003910 | -296 | 4.4 | TACCCATTATGAGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: caiT | ||||
| Ortholog function: L-carnitine/gamma-butyrobetaine antiporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0040 | -122 | 4.4 | TACCCATTATGAGTTA |
|
Position: -97
Score: 3.7 Sequence: TAACCAATAAATGGTA
Locus tag: EcolE1_01004207
|
||||
| EcolE1_01004207 | -97 | 3.7 | TAACCAATAAATGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeaR | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1797 | -97 | 3.7 | TAACCAATAAATGGTA |
|
Position: -164
Score: 4.5 Sequence: TAACCATAAAGGATTA
Locus tag: EcolE1_01004503
|
||||
| EcolE1_01004503 | -164 | 4.5 | TAACCATAAAGGATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhY | ||||
| Ortholog function: Predicted oxidoreductase, FeS cluster subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1674 | -163 | 4.5 | TAACCATAAAGGATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01699 | -111 | 4.4 | TAACTCTTTGGGATTA |