Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtrC regulog to Limnobacter sp. MED105

Reference regulog properties
Source regulog: NtrC - Ralstonia
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Limnobacter sp. MED105
Orthologous TF(s) LMED105_03927, LMED105_12652
Regulated genes 1
Built upon 28 sites [see more]
Predicted regulatory interactions in Limnobacter sp. MED105
Locus tag Position Score Sequence
Position: -258
Score: 5.4
Sequence: TGCACGATAATGGTGCG
Position: -238
Score: 5.1
Sequence: TGCACTGTTATGGTGCA
Locus tag: LMED105_12637
LMED105_12637 -258 5.4 TGCACGATAATGGTGCG
-238 5.1 TGCACTGTTATGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Ralstonia solanacearum GMI1000 RSc1258 -334 5.1 CGCACTATGATGGTGCG
Ralstonia pickettii 12J Rpic_1086 -346 4.7 TGCACCGTTTATGTGCG
Ralstonia metallidurans CH34 Rmet_2062 -297 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha JMP134 Reut_A2057 -319 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha H16 H16_A2335 -295 4.7 TGCACCATTGTGGTGTT
Cupriavidus taiwanensis RALTA_A1880 -334 4.8 CGCACTAATGCGGTGCG
-304 4.7 TGCACCATGATGGTGTT