Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Ralstonia pickettii 12J

Reference regulog properties
Source regulog: LexA - Ralstonia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia pickettii 12J
Orthologous TF(s) Rpic_1179
Regulated genes 5
Built upon 62 sites [see more]
Predicted regulatory interactions in Ralstonia pickettii 12J
Locus tag Position Score Sequence
Position: -40
Score: 5.9
Sequence: TGCTGTATATTCATACAGTT
Locus tag: Rpic_4129
Rpic_4129 -40 5.9 TGCTGTATATTCATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrD
Ortholog function: ATP-dependent DNA helicase II
Ralstonia solanacearum GMI1000 RS05321 -39 6 TGCTGTATATTTATACAGTT
Ralstonia pickettii 12J Rpic_4129 -40 5.9 TGCTGTATATTCATACAGTT
Ralstonia metallidurans CH34 Rmet_0232 -66 5.6 GGCTGTATGGATATACAGTG
Ralstonia eutropha JMP134 Reut_A0283 -6 5.7 GCCTGTATGGATATACAGTT
Ralstonia eutropha H16 H16_A0305 -68 5.7 CCCTGTATGGATATACAGTT
Cupriavidus taiwanensis RALTA_A0247 -62 5.6 GGCTGTATGGATATACAGTT
Position: -44
Score: 6.4
Sequence: TACTGTATATTCATACAGTA
Locus tag: Rpic_4490
Rpic_4490 -44 6.4 TACTGTATATTCATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: imuA
Ortholog function: Predicted RecA/RadA recombinase
Ralstonia solanacearum GMI1000 RS01909 -159 6.2 TACTGTATATCCATACAGTA
Ralstonia pickettii 12J Rpic_4490 -44 6.4 TACTGTATATTCATACAGTA
Ralstonia metallidurans CH34 Rmet_4128 -72 6.4 TACTGTATAAACATACAGTA
Ralstonia eutropha JMP134 Reut_B4525 91 6.3 TACTGTATAAATATACAGTT
Ralstonia eutropha H16 H16_B1060 -72 6.3 TACTGTATAAATATACAGTT
Cupriavidus taiwanensis RALTA_B0872 -72 6.3 TACTGTATAAATATACAGTT
Position: -45
Score: 6
Sequence: AACTGTATATATTCACAGTA
Locus tag: Rpic_4716
Rpic_4716 -45 6 AACTGTATATATTCACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BPSS1334
Ortholog function: Conserved hypothetical protein
Ralstonia solanacearum GMI1000 RS00884 -44 5.9 GCCTGTATATATTTACAGTG
-29 5.2 CAGTGTACGTATATACAGTC
Ralstonia pickettii 12J Rpic_4716 -45 6 AACTGTATATATTCACAGTA
-26 5.3 AACTGTGAATTTATACAGTG
Ralstonia metallidurans CH34 Rmet_1637 -62 6.3 CACTGTATATATTTACAGTA
-43 5.2 AACTGTATGGATGAACAGTC
Ralstonia eutropha JMP134 Reut_B3817 -50 6.4 TACTGTATATATTTACAGTA
-31 5.3 ACCTGTATGGATAAACAGTG
Ralstonia eutropha H16 H16_B0943 -51 6.4 TACTGTATATATTTACAGTA
-32 5.3 ACCTGTATGGATGAACAGTA
Cupriavidus taiwanensis RALTA_B0767 -67 6.4 TACTGTATATATTTACAGTA
-48 5.1 ACCTGTATGGATGAACAGTG
Position: -172
Score: 5.5
Sequence: CACTGGTTTTTTATACAGTA
Locus tag: Rpic_0471
Rpic_0471 -172 5.5 CACTGGTTTTTTATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Ralstonia solanacearum GMI1000 RSc0551 -180 5.5 CACTGGTTTTTTATACAGTA
Ralstonia pickettii 12J Rpic_0471 -172 5.5 CACTGGTTTTTTATACAGTA
Ralstonia metallidurans CH34 Rmet_0466 -171 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha JMP134 Reut_A0527 -194 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha H16 H16_A0544 -159 6.1 TACTGTTTTTTTATACAGTA
Cupriavidus taiwanensis RALTA_A0499 -159 6.1 TACTGTTTTTTTATACAGTA
Position: -25
Score: 5.4
Sequence: ACCTGTTCAAATATACAGTG
Locus tag: Rpic_1179
Rpic_1179 -25 5.4 ACCTGTTCAAATATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Ralstonia solanacearum GMI1000 RSc1304 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia pickettii 12J Rpic_1179 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia metallidurans CH34 Rmet_1981 -63 5.4 TACTGTATAAAATCACAGCA
-43 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha JMP134 Reut_A2008 -95 5 TACTGTATAAAATCACAGGC
-74 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha H16 H16_A2281 -121 5.4 TACTGTATAAAATCACAGCA
-101 6 TACTGTTTAAACATACAGTG
Cupriavidus taiwanensis RALTA_A1825 -118 5.4 TACTGTATAAAATCACAGCA
-98 6 TACTGTTTAAACATACAGTG
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