Propagation of LexA regulog to Ralstonia pickettii 12J
| Source regulog: | LexA - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia pickettii 12J |
| Orthologous TF(s) | Rpic_1179 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -40
Score: 5.9 Sequence: TGCTGTATATTCATACAGTT
Locus tag: Rpic_4129
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| Rpic_4129 | -40 | 5.9 | TGCTGTATATTCATACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrD | ||||
| Ortholog function: ATP-dependent DNA helicase II | ||||
| Ralstonia solanacearum GMI1000 | RS05321 | -39 | 6 | TGCTGTATATTTATACAGTT |
| Ralstonia pickettii 12J | Rpic_4129 | -40 | 5.9 | TGCTGTATATTCATACAGTT |
| Ralstonia metallidurans CH34 | Rmet_0232 | -66 | 5.6 | GGCTGTATGGATATACAGTG |
| Ralstonia eutropha JMP134 | Reut_A0283 | -6 | 5.7 | GCCTGTATGGATATACAGTT |
| Ralstonia eutropha H16 | H16_A0305 | -68 | 5.7 | CCCTGTATGGATATACAGTT |
| Cupriavidus taiwanensis | RALTA_A0247 | -62 | 5.6 | GGCTGTATGGATATACAGTT |
|
Position: -44
Score: 6.4 Sequence: TACTGTATATTCATACAGTA
Locus tag: Rpic_4490
|
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| Rpic_4490 | -44 | 6.4 | TACTGTATATTCATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: imuA | ||||
| Ortholog function: Predicted RecA/RadA recombinase | ||||
| Ralstonia solanacearum GMI1000 | RS01909 | -159 | 6.2 | TACTGTATATCCATACAGTA |
| Ralstonia pickettii 12J | Rpic_4490 | -44 | 6.4 | TACTGTATATTCATACAGTA |
| Ralstonia metallidurans CH34 | Rmet_4128 | -72 | 6.4 | TACTGTATAAACATACAGTA |
| Ralstonia eutropha JMP134 | Reut_B4525 | 91 | 6.3 | TACTGTATAAATATACAGTT |
| Ralstonia eutropha H16 | H16_B1060 | -72 | 6.3 | TACTGTATAAATATACAGTT |
| Cupriavidus taiwanensis | RALTA_B0872 | -72 | 6.3 | TACTGTATAAATATACAGTT |
|
Position: -45
Score: 6 Sequence: AACTGTATATATTCACAGTA
Locus tag: Rpic_4716
|
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| Rpic_4716 | -45 | 6 | AACTGTATATATTCACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BPSS1334 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Ralstonia solanacearum GMI1000 | RS00884 | -44 | 5.9 | GCCTGTATATATTTACAGTG |
| -29 | 5.2 | CAGTGTACGTATATACAGTC | ||
| Ralstonia pickettii 12J | Rpic_4716 | -45 | 6 | AACTGTATATATTCACAGTA |
| -26 | 5.3 | AACTGTGAATTTATACAGTG | ||
| Ralstonia metallidurans CH34 | Rmet_1637 | -62 | 6.3 | CACTGTATATATTTACAGTA |
| -43 | 5.2 | AACTGTATGGATGAACAGTC | ||
| Ralstonia eutropha JMP134 | Reut_B3817 | -50 | 6.4 | TACTGTATATATTTACAGTA |
| -31 | 5.3 | ACCTGTATGGATAAACAGTG | ||
| Ralstonia eutropha H16 | H16_B0943 | -51 | 6.4 | TACTGTATATATTTACAGTA |
| -32 | 5.3 | ACCTGTATGGATGAACAGTA | ||
| Cupriavidus taiwanensis | RALTA_B0767 | -67 | 6.4 | TACTGTATATATTTACAGTA |
| -48 | 5.1 | ACCTGTATGGATGAACAGTG | ||
|
Position: -172
Score: 5.5 Sequence: CACTGGTTTTTTATACAGTA
Locus tag: Rpic_0471
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| Rpic_0471 | -172 | 5.5 | CACTGGTTTTTTATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: Recombinase A | ||||
| Ralstonia solanacearum GMI1000 | RSc0551 | -180 | 5.5 | CACTGGTTTTTTATACAGTA |
| Ralstonia pickettii 12J | Rpic_0471 | -172 | 5.5 | CACTGGTTTTTTATACAGTA |
| Ralstonia metallidurans CH34 | Rmet_0466 | -171 | 6.1 | TACTGTTTTTTTATACAGTA |
| Ralstonia eutropha JMP134 | Reut_A0527 | -194 | 6.1 | TACTGTTTTTTTATACAGTA |
| Ralstonia eutropha H16 | H16_A0544 | -159 | 6.1 | TACTGTTTTTTTATACAGTA |
| Cupriavidus taiwanensis | RALTA_A0499 | -159 | 6.1 | TACTGTTTTTTTATACAGTA |
|
Position: -25
Score: 5.4 Sequence: ACCTGTTCAAATATACAGTG
Locus tag: Rpic_1179
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| Rpic_1179 | -25 | 5.4 | ACCTGTTCAAATATACAGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88) | ||||
| Ralstonia solanacearum GMI1000 | RSc1304 | -44 | 5.3 | CACTGTATAAAATCACAGCA |
| -25 | 5.4 | ACCTGTTCAAATATACAGTG | ||
| Ralstonia pickettii 12J | Rpic_1179 | -44 | 5.3 | CACTGTATAAAATCACAGCA |
| -25 | 5.4 | ACCTGTTCAAATATACAGTG | ||
| Ralstonia metallidurans CH34 | Rmet_1981 | -63 | 5.4 | TACTGTATAAAATCACAGCA |
| -43 | 6 | TACTGTTTAAACATACAGTG | ||
| Ralstonia eutropha JMP134 | Reut_A2008 | -95 | 5 | TACTGTATAAAATCACAGGC |
| -74 | 6 | TACTGTTTAAACATACAGTG | ||
| Ralstonia eutropha H16 | H16_A2281 | -121 | 5.4 | TACTGTATAAAATCACAGCA |
| -101 | 6 | TACTGTTTAAACATACAGTG | ||
| Cupriavidus taiwanensis | RALTA_A1825 | -118 | 5.4 | TACTGTATAAAATCACAGCA |
| -98 | 6 | TACTGTTTAAACATACAGTG | ||