Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Ralstonia solanacearum GMI1000

Reference regulog properties
Source regulog: Fur - Ralstonia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia solanacearum GMI1000
Orthologous TF(s) RSp0247, RSc2747
Regulated genes 13
Built upon 94 sites [see more]
Predicted regulatory interactions in Ralstonia solanacearum GMI1000
Locus tag Position Score Sequence
Position: -77
Score: 5
Sequence: AACAAGAATTGTTCTCATT
Locus tag: RSc0349
RSc0349 -77 5 AACAAGAATTGTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Ralstonia solanacearum GMI1000 RSc0349 -77 5 AACAAGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_0205 -75 5 AACAAGAATTGTTCTCATT
Ralstonia metallidurans CH34 Rmet_0247 -91 5.2 AATGGGAATTGTTATCATT
Ralstonia eutropha JMP134 Reut_A0298 -1 5.2 AAtGggAATTgTTATCaTT
Ralstonia eutropha H16 H16_A0327 -89 5.2 AATGGGAATTGTTATCATT
Cupriavidus taiwanensis RALTA_A0266 -56 5.2 AATGGGAATTGTTATCATT
Position: -126
Score: 5.6
Sequence: AATGAGAATGATTATCAAT
Locus tag: RS04230
RS04230 -126 5.6 AATGAGAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSc1807
Ortholog function: Probable iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS04230 -126 5.6 AATGAGAATGATTATCAAT
Position: -33
Score: 5
Sequence: AATGAGAATCATTTTCATC
Locus tag: RS04237
RS04237 -33 5 AATGAGAATCATTTTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSc1811
Ortholog function: Putative siderophore synthetase protein
Ralstonia solanacearum GMI1000 RS04237 -33 5 AATGAGAATCATTTTCATC
Position: -82
Score: 5.5
Sequence: AATGATAACGATTCTCATT
Locus tag: RSc1966
RSc1966 -82 5.5 AATGATAACGATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: putative hemin uptake protein
Ralstonia solanacearum GMI1000 RSc1966 -82 5.5 AATGATAACGATTCTCATT
Ralstonia pickettii 12J Rpic_2119 -70 5.6 AATGATAACTATTCTCATT
Position: -56
Score: 5.4
Sequence: AATAAGAATTCTTCTCATT
Locus tag: RS00176
RS00176 -56 5.4 AATAAGAATTCTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSc2918
Ortholog function: Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein
Ralstonia solanacearum GMI1000 RS00176 -56 5.4 AATAAGAATTCTTCTCATT
Position: -81
Score: 5.3
Sequence: AACGAGAATCATTCTCATT
Locus tag: RS00511
RS00511 -81 5.3 AACGAGAATCATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: DUF337-3
Ortholog function: Uncharacterized iron-regulated membrane protein, DUF337 family
Ralstonia solanacearum GMI1000 RS00511 -81 5.3 AACGAGAATCATTCTCATT
Ralstonia pickettii 12J Rpic_3345 -75 4.7 AACGAGAATCATTCTCATC
Position: -59
Score: 4.6
Sequence: AGTGATAATCACTCTCATT
Locus tag: RS03023
RS03023 -59 4.6 AGTGATAATCACTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSp0100
Ortholog function: putative iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS03023 -59 4.6 AGTGATAATCACTCTCATT
Position: -223
Score: 5.5
Sequence: ATTGATAATGATTCTTATT
Locus tag: RS03722
RS03722 -223 5.5 ATTGATAATGATTCTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSp0244
Ortholog function: TonB-dependent outer-membrane hemin transporter
Ralstonia solanacearum GMI1000 RS03722 -223 5.5 ATTGATAATGATTCTTATT
-217 4.1 AATGATTCTTATTTGCATT
Position: -66
Score: 4.9
Sequence: AATGAAAACGATTCGCATT
Locus tag: RS03714
RS03714 -66 4.9 AATGAAAACGATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Ralstonia solanacearum GMI1000 RS03714 -66 4.9 AATGAAAACGATTCGCATT
Ralstonia pickettii 12J Rpic_3949 -61 4.9 AATGAAAACGATTCGCATT
Ralstonia metallidurans CH34 Rmet_5891 -82 4.2 ATCGAGAACGATTTCTATT
Ralstonia eutropha JMP134 Reut_B5430 -80 5.2 AATGAAAACGATTTTCATT
Ralstonia eutropha H16 H16_B0085 -80 5.2 AATGAAAACGATTTTCATT
Cupriavidus taiwanensis RALTA_B0077 -83 5.2 AATGAAAACGATTTTCATT
Position: -254
Score: 5
Sequence: ATCAAGAATGATTCTCATT
Position: -70
Score: 5.6
Sequence: ATTGAGAATAATTCTCATT
Locus tag: RS00871
RS00871 -254 5 ATCAAGAATGATTCTCATT
-70 5.6 ATTGAGAATAATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ffcA2
Ortholog function: putative iron-regulated TonB-dependent siderophore transporter
Ralstonia solanacearum GMI1000 RS00871 -254 5 ATCAAGAATGATTCTCATT
-70 5.6 ATTGAGAATAATTCTCATT
Ralstonia eutropha JMP134 Reut_B3686 -108 4.6 CTTGATAATGATTCGCATT
Position: -237
Score: 5.6
Sequence: AATGAGAATTATTCTCAAT
Locus tag: RS00872
RS00872 -237 5.6 AATGAGAATTATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fecI
Ortholog function: Probable RNA polymerase sigma factor FecI
Ralstonia solanacearum GMI1000 RS00872 -237 5.6 AATGAGAATTATTCTCAAT
-53 5 AATGAGAATCATTCTTGAT
Position: -153
Score: 5.1
Sequence: AATGGGAATTGTTCTCATT
Locus tag: RS02469
RS02469 -153 5.1 AATGGGAATTGTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A3182
Ortholog function: putative iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS02469 -153 5.1 AATGGGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_4266 -100 5.1 AATAGGAATTGTTCTCATT
Ralstonia eutropha JMP134 Reut_A2878 -51 5 AATGATAATGCTTCGCATT
Ralstonia eutropha H16 H16_A3182 -153 4.7 AATAGGAATAATTCGCAAT
Cupriavidus taiwanensis RALTA_A2655 -92 4.7 AATAGGAATAATTCGCAAT
Position: -48
Score: 5.2
Sequence: AATGAGAATCATTATCATC
Locus tag: RS02198
RS02198 -48 5.2 AATGAGAATCATTATCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A1450
Ortholog function: putative transmembrane lipoprotein
Ralstonia solanacearum GMI1000 RS02198 -48 5.2 AATGAGAATCATTATCATC
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