Propagation of Fur regulog to Ralstonia solanacearum GMI1000
| Source regulog: | Fur - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia solanacearum GMI1000 |
| Orthologous TF(s) | RSp0247, RSc2747 |
| Regulated genes | 13 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -77
Score: 5 Sequence: AACAAGAATTGTTCTCATT
Locus tag: RSc0349
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| RSc0349 | -77 | 5 | AACAAGAATTGTTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Ralstonia solanacearum GMI1000 | RSc0349 | -77 | 5 | AACAAGAATTGTTCTCATT |
| Ralstonia pickettii 12J | Rpic_0205 | -75 | 5 | AACAAGAATTGTTCTCATT |
| Ralstonia metallidurans CH34 | Rmet_0247 | -91 | 5.2 | AATGGGAATTGTTATCATT |
| Ralstonia eutropha JMP134 | Reut_A0298 | -1 | 5.2 | AAtGggAATTgTTATCaTT |
| Ralstonia eutropha H16 | H16_A0327 | -89 | 5.2 | AATGGGAATTGTTATCATT |
| Cupriavidus taiwanensis | RALTA_A0266 | -56 | 5.2 | AATGGGAATTGTTATCATT |
|
Position: -126
Score: 5.6 Sequence: AATGAGAATGATTATCAAT
Locus tag: RS04230
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| RS04230 | -126 | 5.6 | AATGAGAATGATTATCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc1807 | ||||
| Ortholog function: Probable iron-regulated TonB-dependent transporter | ||||
| Ralstonia solanacearum GMI1000 | RS04230 | -126 | 5.6 | AATGAGAATGATTATCAAT |
|
Position: -33
Score: 5 Sequence: AATGAGAATCATTTTCATC
Locus tag: RS04237
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| RS04237 | -33 | 5 | AATGAGAATCATTTTCATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc1811 | ||||
| Ortholog function: Putative siderophore synthetase protein | ||||
| Ralstonia solanacearum GMI1000 | RS04237 | -33 | 5 | AATGAGAATCATTTTCATC |
|
Position: -82
Score: 5.5 Sequence: AATGATAACGATTCTCATT
Locus tag: RSc1966
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| RSc1966 | -82 | 5.5 | AATGATAACGATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemP | ||||
| Ortholog function: putative hemin uptake protein | ||||
| Ralstonia solanacearum GMI1000 | RSc1966 | -82 | 5.5 | AATGATAACGATTCTCATT |
| Ralstonia pickettii 12J | Rpic_2119 | -70 | 5.6 | AATGATAACTATTCTCATT |
|
Position: -56
Score: 5.4 Sequence: AATAAGAATTCTTCTCATT
Locus tag: RS00176
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| RS00176 | -56 | 5.4 | AATAAGAATTCTTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc2918 | ||||
| Ortholog function: Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein | ||||
| Ralstonia solanacearum GMI1000 | RS00176 | -56 | 5.4 | AATAAGAATTCTTCTCATT |
|
Position: -81
Score: 5.3 Sequence: AACGAGAATCATTCTCATT
Locus tag: RS00511
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| RS00511 | -81 | 5.3 | AACGAGAATCATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DUF337-3 | ||||
| Ortholog function: Uncharacterized iron-regulated membrane protein, DUF337 family | ||||
| Ralstonia solanacearum GMI1000 | RS00511 | -81 | 5.3 | AACGAGAATCATTCTCATT |
| Ralstonia pickettii 12J | Rpic_3345 | -75 | 4.7 | AACGAGAATCATTCTCATC |
|
Position: -59
Score: 4.6 Sequence: AGTGATAATCACTCTCATT
Locus tag: RS03023
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| RS03023 | -59 | 4.6 | AGTGATAATCACTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSp0100 | ||||
| Ortholog function: putative iron-regulated TonB-dependent transporter | ||||
| Ralstonia solanacearum GMI1000 | RS03023 | -59 | 4.6 | AGTGATAATCACTCTCATT |
|
Position: -223
Score: 5.5 Sequence: ATTGATAATGATTCTTATT
Locus tag: RS03722
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| RS03722 | -223 | 5.5 | ATTGATAATGATTCTTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSp0244 | ||||
| Ortholog function: TonB-dependent outer-membrane hemin transporter | ||||
| Ralstonia solanacearum GMI1000 | RS03722 | -223 | 5.5 | ATTGATAATGATTCTTATT |
| -217 | 4.1 | AATGATTCTTATTTGCATT | ||
|
Position: -66
Score: 4.9 Sequence: AATGAAAACGATTCGCATT
Locus tag: RS03714
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| RS03714 | -66 | 4.9 | AATGAAAACGATTCGCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Ralstonia solanacearum GMI1000 | RS03714 | -66 | 4.9 | AATGAAAACGATTCGCATT |
| Ralstonia pickettii 12J | Rpic_3949 | -61 | 4.9 | AATGAAAACGATTCGCATT |
| Ralstonia metallidurans CH34 | Rmet_5891 | -82 | 4.2 | ATCGAGAACGATTTCTATT |
| Ralstonia eutropha JMP134 | Reut_B5430 | -80 | 5.2 | AATGAAAACGATTTTCATT |
| Ralstonia eutropha H16 | H16_B0085 | -80 | 5.2 | AATGAAAACGATTTTCATT |
| Cupriavidus taiwanensis | RALTA_B0077 | -83 | 5.2 | AATGAAAACGATTTTCATT |
|
Position: -254
Score: 5 Sequence: ATCAAGAATGATTCTCATT
Position: -70
Score: 5.6 Sequence: ATTGAGAATAATTCTCATT
Locus tag: RS00871
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| RS00871 | -254 | 5 | ATCAAGAATGATTCTCATT | |
| -70 | 5.6 | ATTGAGAATAATTCTCATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ffcA2 | ||||
| Ortholog function: putative iron-regulated TonB-dependent siderophore transporter | ||||
| Ralstonia solanacearum GMI1000 | RS00871 | -254 | 5 | ATCAAGAATGATTCTCATT |
| -70 | 5.6 | ATTGAGAATAATTCTCATT | ||
| Ralstonia eutropha JMP134 | Reut_B3686 | -108 | 4.6 | CTTGATAATGATTCGCATT |
|
Position: -237
Score: 5.6 Sequence: AATGAGAATTATTCTCAAT
Locus tag: RS00872
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| RS00872 | -237 | 5.6 | AATGAGAATTATTCTCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fecI | ||||
| Ortholog function: Probable RNA polymerase sigma factor FecI | ||||
| Ralstonia solanacearum GMI1000 | RS00872 | -237 | 5.6 | AATGAGAATTATTCTCAAT |
| -53 | 5 | AATGAGAATCATTCTTGAT | ||
|
Position: -153
Score: 5.1 Sequence: AATGGGAATTGTTCTCATT
Locus tag: RS02469
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| RS02469 | -153 | 5.1 | AATGGGAATTGTTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: h16_A3182 | ||||
| Ortholog function: putative iron-regulated TonB-dependent transporter | ||||
| Ralstonia solanacearum GMI1000 | RS02469 | -153 | 5.1 | AATGGGAATTGTTCTCATT |
| Ralstonia pickettii 12J | Rpic_4266 | -100 | 5.1 | AATAGGAATTGTTCTCATT |
| Ralstonia eutropha JMP134 | Reut_A2878 | -51 | 5 | AATGATAATGCTTCGCATT |
| Ralstonia eutropha H16 | H16_A3182 | -153 | 4.7 | AATAGGAATAATTCGCAAT |
| Cupriavidus taiwanensis | RALTA_A2655 | -92 | 4.7 | AATAGGAATAATTCGCAAT |
|
Position: -48
Score: 5.2 Sequence: AATGAGAATCATTATCATC
Locus tag: RS02198
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| RS02198 | -48 | 5.2 | AATGAGAATCATTATCATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: h16_A1450 | ||||
| Ortholog function: putative transmembrane lipoprotein | ||||
| Ralstonia solanacearum GMI1000 | RS02198 | -48 | 5.2 | AATGAGAATCATTATCATC |