Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Ralstonia solanacearum GMI1000

Reference regulog properties
Source regulog: NsrR - Ralstonia
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia solanacearum GMI1000
Orthologous TF(s) RS01705
Regulated genes 4
Built upon 23 sites [see more]
Predicted regulatory interactions in Ralstonia solanacearum GMI1000
Locus tag Position Score Sequence
Position: -134
Score: 4.3
Sequence: CATGCATATTAAATACCAC
Position: -67
Score: 5.3
Sequence: GATTCATCGCCAATGAATG
Locus tag: RS01705
RS01705 -134 4.3 CATGCATATTAAATACCAC
-67 5.3 GATTCATCGCCAATGAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nsrR
Ortholog function: Nitrite-sensitive transcriptional repressor NsrR
Ralstonia solanacearum GMI1000 RS01705 -134 4.3 CATGCATATTAAATACCAC
Ralstonia pickettii 12J Rpic_3608 -218 3.6 TATGCGTGAAATATGCAAC
Position: -200
Score: 5.3
Sequence: CATTCATTGGCGATGAATC
Position: -133
Score: 4.3
Sequence: GTGGTATTTAATATGCATG
Locus tag: RS01706
RS01706 -200 5.3 CATTCATTGGCGATGAATC
-133 4.3 GTGGTATTTAATATGCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Ralstonia eutropha H16 H16_A3533 -41 5.6 CATGCATTTAATTTGCATG
Cupriavidus taiwanensis RALTA_A2986 -40 4.6 CATGCATATTTTCTGCATG
Ralstonia metallidurans CH34 Rmet_3382 32 6 CATGCATTTTACATGCATG
Ralstonia eutropha JMP134 Reut_A3219 -41 5.5 CATGCATTTTGTTTGCATG
Ralstonia solanacearum GMI1000 RS01706 -133 4.3 GTGGTATTTAATATGCATG
Ralstonia pickettii 12J Rpic_3609 -32 3.6 GTTGCATATTTCACGCATA
Position: -203
Score: 5.8
Sequence: GATGCATTGAGAATGCATC
Locus tag: RS03038
RS03038 -203 5.8 GATGCATTGAGAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirK
Ortholog function: Copper-containing nitrite reductase (EC 1.7.2.1)
Ralstonia solanacearum GMI1000 RS03038 -203 5.8 GATGCATTGAGAATGCATC
-153 3.7 GATGTATATCAGATACTTG
Ralstonia pickettii 12J Rpic_4015 -241 5 GATGCATTAAGGATGCAAC
-191 4.3 GATGTATATCAGATGCTTG
Position: -53
Score: 5.8
Sequence: GATGCATTCTCAATGCATC
Locus tag: RS03037
RS03037 -53 5.8 GATGCATTCTCAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF10006
Ortholog function: hypothetical protein, PF10006
Ralstonia metallidurans CH34 Rmet_4922 -53 5.6 GATGCAATTTAAATGCATC
Ralstonia solanacearum GMI1000 RS03037 -103 3.7 CAAGTATCTGATATACATC
-53 5.8 GATGCATTCTCAATGCATC
Ralstonia pickettii 12J Rpic_4014 -101 4.3 CAAGCATCTGATATACATC
-51 5 GTTGCATCCTTAATGCATC
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