Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Ralstonia solanacearum GMI1000

Reference regulog properties
Source regulog: NtrC - Ralstonia
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia solanacearum GMI1000
Orthologous TF(s) RSc1261
Regulated genes 3
Built upon 28 sites [see more]
Predicted regulatory interactions in Ralstonia solanacearum GMI1000
Locus tag Position Score Sequence
Position: -334
Score: 5.1
Sequence: CGCACTATGATGGTGCG
Locus tag: RSc1258
RSc1258 -334 5.1 CGCACTATGATGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Ralstonia solanacearum GMI1000 RSc1258 -334 5.1 CGCACTATGATGGTGCG
Ralstonia pickettii 12J Rpic_1086 -346 4.7 TGCACCGTTTATGTGCG
Ralstonia metallidurans CH34 Rmet_2062 -297 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha JMP134 Reut_A2057 -319 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha H16 H16_A2335 -295 4.7 TGCACCATTGTGGTGTT
Cupriavidus taiwanensis RALTA_A1880 -334 4.8 CGCACTAATGCGGTGCG
-304 4.7 TGCACCATGATGGTGTT
Position: -193
Score: 4.6
Sequence: TGCACCAATTTGTGGCG
Locus tag: RSc2870
RSc2870 -193 4.6 TGCACCAATTTGTGGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: Dipeptide ABC transporter, substrate-binding component
Ralstonia solanacearum GMI1000 RSc2870 -193 4.6 TGCACCAATTTGTGGCG
Ralstonia metallidurans CH34 Rmet_3158 -218 4.5 CGCAGCATTGCGGGGCA
-91 4.3 CGCACCAAAATGCGGCC
Ralstonia eutropha JMP134 Reut_A3006 -93 4.9 CGCACCAAAATGCAGCG
Ralstonia eutropha H16 H16_A3298 -93 4.7 CGCACCAAAACGCAGCG
Cupriavidus taiwanensis RALTA_A2753 -93 4.6 CGCACCAAAAAGCAGCG
Position: -258
Score: 4.8
Sequence: TGCACCGAAACCGTGCA
Locus tag: RS03167
RS03167 -258 4.8 TGCACCGAAACCGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Ralstonia solanacearum GMI1000 RS03167 -258 4.8 TGCACCGAAACCGTGCA
Ralstonia pickettii 12J Rpic_4163 -272 4.4 TGCACCGAAAGCGTGCG
Ralstonia metallidurans CH34 Rmet_4817 -284 5 CGCACCATTGCCGTGCG
Ralstonia eutropha JMP134 Reut_B4859 -271 4.2 CGCACCATGACTGTGCC
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