Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NrdR regulog to Herminiimonas arsenicoxydans

Reference regulog properties
Source regulog: NrdR - Ralstonia
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Herminiimonas arsenicoxydans
Orthologous TF(s) HEAR2379
Regulated genes 2
Built upon 18 sites [see more]
Predicted regulatory interactions in Herminiimonas arsenicoxydans
Locus tag Position Score Sequence
Position: -62
Score: 4.2
Sequence: TCACTACATATAGTCA
Position: -31
Score: 5
Sequence: ACACCACATATTGTGT
Locus tag: HEAR1672
HEAR1672 -62 4.2 TCACTACATATAGTCA
-31 5 ACACCACATATTGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ralstonia solanacearum GMI1000 RSp0963 -50 4.6 CCACAACATCTAGTGC
-19 3.9 CCACTATATGGAGTAC
Ralstonia pickettii 12J Rpic_4657 -53 4.7 CCACAATATCTAGTGC
-21 5.1 CCACTATATGTAGGGG
Ralstonia pickettii 12J Rpic_2106 -50 4.7 CCACAATATGTAGTGC
-19 3.9 CCACTATATGGAGTAC
Ralstonia metallidurans CH34 Rmet_5139 -67 3.8 ACACCACCTATGGTAT
-36 3.9 ACCCCATATTTTGTGC
Ralstonia eutropha H16 PHG240 -67 5.3 AAACTACATATAGTGT
-36 3.8 TCCCCGCATCTAGTGT