Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PsrA regulog to Burkholderia graminis C4D1M

Reference regulog properties
Source regulog: PsrA - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia graminis C4D1M
Orthologous TF(s) BgramDRAFT_5230
Regulated genes 1
Built upon 9 sites [see more]
Predicted regulatory interactions in Burkholderia graminis C4D1M
Locus tag Position Score Sequence
Position: -189
Score: 4.1
Sequence: GTCGGAACGGCCTTTTTATT
Position: -76
Score: 5.7
Sequence: AAAAAAACGGCTGTTTCAAA
Position: -63
Score: 3.9
Sequence: TTTCAAATTGACATTTGAAT
Position: -50
Score: 3.7
Sequence: TTTGAATCGCCTGTTTGCGG
Locus tag: BgramDRAFT_5230
BgramDRAFT_5230 -189 4.1 GTCGGAACGGCCTTTTTATT
-76 5.7 AAAAAAACGGCTGTTTCAAA
-63 3.9 TTTCAAATTGACATTTGAAT
-50 3.7 TTTGAATCGCCTGTTTGCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: Transcriptional regulator for fatty acid degradation PsrA, TetR family
Ralstonia solanacearum GMI1000 RS04928 -122 4.6 TTTAAAACATCCGTTCCTAA
Ralstonia pickettii 12J Rpic_0418 -121 4.5 TTTCAAACGTCTGTTCCTAA
Ralstonia eutropha JMP134 Reut_A3446 -120 3.6 ATTAGAGCAGGCATTCGAAT
Ralstonia eutropha H16 H16_A3736 -104 4 CTTCGTACAGCTGTTTCAAG
Cupriavidus taiwanensis RALTA_A3194 -105 4 CTTCGTACAGCTGTTTCAAG
© 2009-2020 RegPrecise