Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FadP regulog to Burkholderia graminis C4D1M

Reference regulog properties
Source regulog: FadP - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia graminis C4D1M
Orthologous TF(s) BgramDRAFT_1402
Regulated genes 6
Built upon 85 sites [see more]
Predicted regulatory interactions in Burkholderia graminis C4D1M
Locus tag Position Score Sequence
Position: -49
Score: 5.3
Sequence: TAGTACGGCCGTTCGA
Locus tag: BgramDRAFT_1402
BgramDRAFT_1402 -49 5.3 TAGTACGGCCGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadP
Ortholog function: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Ralstonia solanacearum GMI1000 RS04423 -136 5.7 TTGAACGATCGTTCGA
Ralstonia pickettii 12J Rpic_0347 -136 5.6 TTGAACGACCGTTCGA
Ralstonia metallidurans CH34 Rmet_0384 -142 4.9 CTGAACGACCGTTCTT
Ralstonia eutropha JMP134 Reut_A0445 -140 4.9 CTGAACGACCGTTCTT
Ralstonia eutropha H16 H16_A0459 -143 4.9 CTGAACGACCGTTCTT
Cupriavidus taiwanensis RALTA_A0402 -141 4.9 CTGAACGACCGTTCTT
Position: -136
Score: 5.4
Sequence: TCGAACGACCGTTCTT
Locus tag: BgramDRAFT_1614
BgramDRAFT_1614 -136 5.4 TCGAACGACCGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nppD
Ortholog function: 2-nitropropane dioxygenase NPD
Ralstonia metallidurans CH34 Rmet_0222 -39 5.4 TCGAACGATCGTTCCA
Ralstonia eutropha JMP134 Reut_A0268 -58 5.2 TCGAACGACCGTTCAT
Ralstonia eutropha H16 H16_A0293 -59 5.2 TCGAACGACCGTTCAT
Cupriavidus taiwanensis RALTA_A0233 -58 5.2 TCGAACGACCGTTCAC
Position: -102
Score: 5.1
Sequence: TAGAACGCTCGTGCTA
Locus tag: BgramDRAFT_5861
BgramDRAFT_5861 -102 5.1 TAGAACGCTCGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Ralstonia solanacearum GMI1000 RSc1567 -120 5.6 TCGAACGACCGTTCAA
Ralstonia pickettii 12J Rpic_1986 -121 5.2 TCGAACGATCGTTCAG
Ralstonia metallidurans CH34 Rmet_1146 -243 5.4 AAGAACGGTCGTTCAA
Ralstonia eutropha JMP134 Reut_A1262 -211 5.1 AAGAACGACCGTTCCA
Ralstonia eutropha H16 H16_A1324 -248 5.1 AAGAACGACCGTTCCA
Cupriavidus taiwanensis RALTA_A1245 -288 5.1 AAGAACGACCGTTCCA
Position: -29
Score: 4.8
Sequence: TTGCACGAGCGTGCTA
Locus tag: BgramDRAFT_6310
BgramDRAFT_6310 -29 4.8 TTGCACGAGCGTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaH1
Ortholog function: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
Ralstonia solanacearum GMI1000 RSc2013 -49 4.9 TCGCACGCTCGTGCTA
Ralstonia pickettii 12J Rpic_2168 -53 4.9 TCGCACGCTCGTGCTA
Ralstonia metallidurans CH34 Rmet_0974 -44 4.9 ACGTACGATCGTGCTA
Ralstonia eutropha JMP134 Reut_A1010 -43 4.9 ACGTACGATCGTGCTA
Ralstonia eutropha H16 H16_A1102 -43 4.9 ACGTACGATCGTGCTA
Cupriavidus taiwanensis RALTA_A1087 -31 4.9 ACGTACGATCGTGCTA
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