Propagation of FadP regulog to Ralstonia metallidurans CH34
| Source regulog: | FadP - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | |
| Biological process: | Fatty acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia metallidurans CH34 |
| Orthologous TF(s) | Rmet_0384 |
| Regulated genes | 13 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -32
Score: 5 Sequence: ACGAACGATCGTTCAC
Locus tag: Rmet_0102
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| Rmet_0102 | -32 | 5 | ACGAACGATCGTTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family | ||||
| Ralstonia metallidurans CH34 | Rmet_0102 | -32 | 5 | ACGAACGATCGTTCAC |
| Ralstonia eutropha JMP134 | Reut_A0133 | -32 | 4.9 | ACGAACGACCGTTCAC |
| Ralstonia eutropha H16 | H16_A0165 | -32 | 4.9 | ACGAACGACCGTTCAC |
| Cupriavidus taiwanensis | RALTA_A0108 | -32 | 4.9 | ACGAACGACCGTTCAC |
|
Position: -39
Score: 5.4 Sequence: TCGAACGATCGTTCCA
Locus tag: Rmet_0222
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| Rmet_0222 | -39 | 5.4 | TCGAACGATCGTTCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nppD | ||||
| Ortholog function: 2-nitropropane dioxygenase NPD | ||||
| Ralstonia metallidurans CH34 | Rmet_0222 | -39 | 5.4 | TCGAACGATCGTTCCA |
| Ralstonia eutropha JMP134 | Reut_A0268 | -58 | 5.2 | TCGAACGACCGTTCAT |
| Ralstonia eutropha H16 | H16_A0293 | -59 | 5.2 | TCGAACGACCGTTCAT |
| Cupriavidus taiwanensis | RALTA_A0233 | -58 | 5.2 | TCGAACGACCGTTCAC |
|
Position: -142
Score: 4.9 Sequence: CTGAACGACCGTTCTT
Locus tag: Rmet_0384
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| Rmet_0384 | -142 | 4.9 | CTGAACGACCGTTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadP | ||||
| Ortholog function: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family | ||||
| Ralstonia solanacearum GMI1000 | RS04423 | -136 | 5.7 | TTGAACGATCGTTCGA |
| Ralstonia pickettii 12J | Rpic_0347 | -136 | 5.6 | TTGAACGACCGTTCGA |
| Ralstonia metallidurans CH34 | Rmet_0384 | -142 | 4.9 | CTGAACGACCGTTCTT |
| Ralstonia eutropha JMP134 | Reut_A0445 | -140 | 4.9 | CTGAACGACCGTTCTT |
| Ralstonia eutropha H16 | H16_A0459 | -143 | 4.9 | CTGAACGACCGTTCTT |
| Cupriavidus taiwanensis | RALTA_A0402 | -141 | 4.9 | CTGAACGACCGTTCTT |
|
Position: -48
Score: 5.5 Sequence: TAGTACGATCGTTCGA
Locus tag: Rmet_0737
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| Rmet_0737 | -48 | 5.5 | TAGTACGATCGTTCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfB | ||||
| Ortholog function: Electron transfer flavoprotein, beta subunit | ||||
| Ralstonia solanacearum GMI1000 | RSc0923 | -95 | 5.2 | TAGCACGACCGTTCGT |
| Ralstonia pickettii 12J | Rpic_0793 | -96 | 5.1 | TAGCACGACCGTTCGG |
| Ralstonia metallidurans CH34 | Rmet_0737 | -48 | 5.5 | TAGTACGATCGTTCGA |
| Ralstonia eutropha JMP134 | Reut_A2550 | -97 | 5.5 | TAGTACGATCGTTCGA |
| Ralstonia eutropha H16 | H16_A0814 | -98 | 5.5 | TAGTACGATCGTTCGA |
| Cupriavidus taiwanensis | RALTA_A0795 | -98 | 5.5 | TAGTACGATCGTTCGA |
|
Position: -62
Score: 5.2 Sequence: TAGCACGACCGTTCAC
Locus tag: Rmet_0943
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| Rmet_0943 | -62 | 5.2 | TAGCACGACCGTTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc2046 | ||||
| Ortholog function: conserved hypothetical protein, DUF1178 | ||||
| Ralstonia solanacearum GMI1000 | RS03611 | -63 | 5.5 | TAGCACGACCGTTCAA |
| Ralstonia pickettii 12J | Rpic_2198 | -85 | 5.1 | GCGAACGGTCGTGCGA |
| -63 | 5.2 | TAGCACGACCGTTCAC | ||
| Ralstonia metallidurans CH34 | Rmet_0943 | -62 | 5.2 | TAGCACGACCGTTCAC |
| Ralstonia eutropha JMP134 | Reut_A0977 | -64 | 5.2 | TAGCACGACCGTTCAC |
| Ralstonia eutropha H16 | H16_A1066 | -87 | 5.3 | CCGAACGGTCGTTCTA |
| -64 | 5.2 | TAGCACGACCGTTCAC | ||
| Cupriavidus taiwanensis | RALTA_A1050 | -87 | 5.4 | ACGAACGGTCGTTCTA |
| -64 | 5.2 | TAGCACGACCGTTCAC | ||
|
Position: -44
Score: 4.9 Sequence: ACGTACGATCGTGCTA
Locus tag: Rmet_0974
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| Rmet_0974 | -44 | 4.9 | ACGTACGATCGTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaH1 | ||||
| Ortholog function: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation | ||||
| Ralstonia solanacearum GMI1000 | RSc2013 | -49 | 4.9 | TCGCACGCTCGTGCTA |
| Ralstonia pickettii 12J | Rpic_2168 | -53 | 4.9 | TCGCACGCTCGTGCTA |
| Ralstonia metallidurans CH34 | Rmet_0974 | -44 | 4.9 | ACGTACGATCGTGCTA |
| Ralstonia eutropha JMP134 | Reut_A1010 | -43 | 4.9 | ACGTACGATCGTGCTA |
| Ralstonia eutropha H16 | H16_A1102 | -43 | 4.9 | ACGTACGATCGTGCTA |
| Cupriavidus taiwanensis | RALTA_A1087 | -31 | 4.9 | ACGTACGATCGTGCTA |
|
Position: -16
Score: 5.4 Sequence: TAGAACGGTCGTTCGC
Locus tag: Rmet_1061
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| Rmet_1061 | -16 | 5.4 | TAGAACGGTCGTTCGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acsA | ||||
| Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1) | ||||
| Ralstonia metallidurans CH34 | Rmet_1061 | -16 | 5.4 | TAGAACGGTCGTTCGC |
| Ralstonia eutropha JMP134 | Reut_A1097 | -49 | 5.4 | TAGAACGACCGTTCGC |
| Ralstonia eutropha H16 | H16_A1197 | -91 | 5.5 | TAGAACGATCGTTCGC |
| Cupriavidus taiwanensis | RALTA_A1174 | -95 | 5.5 | TAGAACGATCGTTCGC |
|
Position: -243
Score: 5.4 Sequence: AAGAACGGTCGTTCAA
Locus tag: Rmet_1146
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| Rmet_1146 | -243 | 5.4 | AAGAACGGTCGTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Ralstonia solanacearum GMI1000 | RSc1567 | -120 | 5.6 | TCGAACGACCGTTCAA |
| Ralstonia pickettii 12J | Rpic_1986 | -121 | 5.2 | TCGAACGATCGTTCAG |
| Ralstonia metallidurans CH34 | Rmet_1146 | -243 | 5.4 | AAGAACGGTCGTTCAA |
| Ralstonia eutropha JMP134 | Reut_A1262 | -211 | 5.1 | AAGAACGACCGTTCCA |
| Ralstonia eutropha H16 | H16_A1324 | -248 | 5.1 | AAGAACGACCGTTCCA |
| Cupriavidus taiwanensis | RALTA_A1245 | -288 | 5.1 | AAGAACGACCGTTCCA |
|
Position: -72
Score: 4.7 Sequence: AAGTACGGTCGTTCGT
Locus tag: Rmet_1362
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| Rmet_1362 | -72 | 4.7 | AAGTACGGTCGTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bktB | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) | ||||
| Ralstonia solanacearum GMI1000 | RSc1637 | -59 | 4.8 | TCGAACGATCGTTTGC |
| Ralstonia pickettii 12J | Rpic_1910 | -59 | 4.7 | GCGAACGGTCGTGCGT |
| Ralstonia metallidurans CH34 | Rmet_1362 | -72 | 4.7 | AAGTACGGTCGTTCGT |
| Ralstonia eutropha JMP134 | Reut_A1353 | -71 | 5.1 | AAGTACGATCGTTCGA |
| Ralstonia eutropha H16 | H16_A1445 | -73 | 4.5 | AAGTACGCTCGTTCGA |
| Cupriavidus taiwanensis | RALTA_A1359 | -72 | 4.6 | AAGTACGACCGTTCAC |
|
Position: -165
Score: 5.5 Sequence: TTGAACGACCGTGCTA
Locus tag: Rmet_1855
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| Rmet_1855 | -165 | 5.5 | TTGAACGACCGTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadB | ||||
| Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) | ||||
| Ralstonia solanacearum GMI1000 | RS02946 | -101 | 5.5 | TTGAACGACCGTGCTA |
| Ralstonia pickettii 12J | Rpic_1447 | -141 | 5.5 | TTGAACGACCGTGCTA |
| Ralstonia metallidurans CH34 | Rmet_1855 | -165 | 5.5 | TTGAACGACCGTGCTA |
| Ralstonia eutropha JMP134 | Reut_A1405 | -203 | 5.5 | TTGAACGACCGTGCTA |
| Ralstonia eutropha H16 | H16_A1526 | -214 | 5.5 | TTGAACGACCGTGCTA |
| Cupriavidus taiwanensis | RALTA_A1467 | -218 | 5.5 | TTGAACGACCGTGCTA |
|
Position: -73
Score: 4.6 Sequence: TAGCACGATTGTTCGT
Locus tag: Rmet_1863
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| Rmet_1863 | -73 | 4.6 | TAGCACGATTGTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: alkK | ||||
| Ortholog function: Medium-chain-fatty-acid-CoA ligase | ||||
| Ralstonia solanacearum GMI1000 | RSc1749 | -42 | 4.6 | TAGAACGGTTGTTCAG |
| Ralstonia pickettii 12J | Rpic_1455 | -34 | 4.6 | TAGAACGGTTGTTCAG |
| Ralstonia metallidurans CH34 | Rmet_1863 | -73 | 4.6 | TAGCACGATTGTTCGT |
| Ralstonia eutropha JMP134 | Reut_A1398 | -54 | 4.7 | TAGAACGGTTGTTCGT |
| Ralstonia eutropha H16 | H16_A1519 | -55 | 4.4 | TAGTACGGTTGTTCGT |
| Cupriavidus taiwanensis | RALTA_A1460 | -73 | 4.6 | GCGAACGACCGTCCAA |
| -54 | 4.4 | TAGTACGGTTGTTCGT | ||
|
Position: -106
Score: 5.3 Sequence: TAGAACGGTCGTTCAG
Locus tag: Rmet_2635
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| Rmet_2635 | -106 | 5.3 | TAGAACGGTCGTTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD2 | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Ralstonia solanacearum GMI1000 | RSc0780 | -58 | 5.3 | TAGAACGATCGTTCAG |
| Ralstonia pickettii 12J | Rpic_0727 | -60 | 5.4 | TAGAACGATCGTTCGG |
| Ralstonia metallidurans CH34 | Rmet_2635 | -106 | 5.3 | TAGAACGGTCGTTCAG |
| Ralstonia eutropha JMP134 | Reut_A0823 | -73 | 5.4 | TAGAACGATCGTTCGG |
| Ralstonia eutropha H16 | H16_A2794 | -74 | 5.4 | TAGAACGATCGTTCGG |
| Cupriavidus taiwanensis | RALTA_A2284 | -73 | 5.4 | TAGAACGATCGTTCGG |
|
Position: -32
Score: 4.7 Sequence: TCGAACGACCATTCAG
Locus tag: Rmet_3148
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| Rmet_3148 | -32 | 4.7 | TCGAACGACCATTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD1 | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Ralstonia solanacearum GMI1000 | RSc2857 | -47 | 5.2 | TCGAACGACCATTCGA |
| Ralstonia pickettii 12J | Rpic_3104 | -46 | 4.8 | ACGAACGACCATTCGA |
| Ralstonia metallidurans CH34 | Rmet_3148 | -32 | 4.7 | TCGAACGACCATTCAG |
| Ralstonia eutropha JMP134 | Reut_A2994 | -34 | 4.7 | TCGAACGACCATTCAG |
| Ralstonia eutropha H16 | H16_A3288 | -34 | 4.7 | TCGAACGACCATTCAG |
| Cupriavidus taiwanensis | RALTA_A2744 | -35 | 4.7 | TCGAACGACCATTCAG |