Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Ralstonia metallidurans CH34

Reference regulog properties
Source regulog: LexA - Ralstonia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia metallidurans CH34
Orthologous TF(s) Rmet_1981
Regulated genes 9
Built upon 62 sites [see more]
Predicted regulatory interactions in Ralstonia metallidurans CH34
Locus tag Position Score Sequence
Position: -66
Score: 5.6
Sequence: GGCTGTATGGATATACAGTG
Locus tag: Rmet_0232
Rmet_0232 -66 5.6 GGCTGTATGGATATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrD
Ortholog function: ATP-dependent DNA helicase II
Ralstonia solanacearum GMI1000 RS05321 -39 6 TGCTGTATATTTATACAGTT
Ralstonia pickettii 12J Rpic_4129 -40 5.9 TGCTGTATATTCATACAGTT
Ralstonia metallidurans CH34 Rmet_0232 -66 5.6 GGCTGTATGGATATACAGTG
Ralstonia eutropha JMP134 Reut_A0283 -6 5.7 GCCTGTATGGATATACAGTT
Ralstonia eutropha H16 H16_A0305 -68 5.7 CCCTGTATGGATATACAGTT
Cupriavidus taiwanensis RALTA_A0247 -62 5.6 GGCTGTATGGATATACAGTT
Position: -171
Score: 6.1
Sequence: TACTGTTTTTTTATACAGTA
Locus tag: Rmet_0466
Rmet_0466 -171 6.1 TACTGTTTTTTTATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Ralstonia solanacearum GMI1000 RSc0551 -180 5.5 CACTGGTTTTTTATACAGTA
Ralstonia pickettii 12J Rpic_0471 -172 5.5 CACTGGTTTTTTATACAGTA
Ralstonia metallidurans CH34 Rmet_0466 -171 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha JMP134 Reut_A0527 -194 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha H16 H16_A0544 -159 6.1 TACTGTTTTTTTATACAGTA
Cupriavidus taiwanensis RALTA_A0499 -159 6.1 TACTGTTTTTTTATACAGTA
Position: -48
Score: 6.5
Sequence: TACTGTATATTTATACAGTA
Locus tag: Rmet_0742
Rmet_0742 -48 6.5 TACTGTATATTTATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF04055
Ortholog function: DNA repair photolyase
Ralstonia metallidurans CH34 Rmet_0742 -48 6.5 TACTGTATATTTATACAGTA
Ralstonia eutropha H16 H16_A0887 -44 6.5 TACTGTATATATATACAGTG
Position: -62
Score: 6.3
Sequence: CACTGTATATATTTACAGTA
Locus tag: Rmet_1637
Rmet_1637 -62 6.3 CACTGTATATATTTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BPSS1334
Ortholog function: Conserved hypothetical protein
Ralstonia solanacearum GMI1000 RS00884 -44 5.9 GCCTGTATATATTTACAGTG
-29 5.2 CAGTGTACGTATATACAGTC
Ralstonia pickettii 12J Rpic_4716 -45 6 AACTGTATATATTCACAGTA
-26 5.3 AACTGTGAATTTATACAGTG
Ralstonia metallidurans CH34 Rmet_1637 -62 6.3 CACTGTATATATTTACAGTA
-43 5.2 AACTGTATGGATGAACAGTC
Ralstonia eutropha JMP134 Reut_B3817 -50 6.4 TACTGTATATATTTACAGTA
-31 5.3 ACCTGTATGGATAAACAGTG
Ralstonia eutropha H16 H16_B0943 -51 6.4 TACTGTATATATTTACAGTA
-32 5.3 ACCTGTATGGATGAACAGTA
Cupriavidus taiwanensis RALTA_B0767 -67 6.4 TACTGTATATATTTACAGTA
-48 5.1 ACCTGTATGGATGAACAGTG
Position: -63
Score: 5.4
Sequence: TACTGTATAAAATCACAGCA
Position: -43
Score: 6
Sequence: TACTGTTTAAACATACAGTG
Locus tag: Rmet_1981
Rmet_1981 -63 5.4 TACTGTATAAAATCACAGCA
-43 6 TACTGTTTAAACATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Ralstonia solanacearum GMI1000 RSc1304 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia pickettii 12J Rpic_1179 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia metallidurans CH34 Rmet_1981 -63 5.4 TACTGTATAAAATCACAGCA
-43 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha JMP134 Reut_A2008 -95 5 TACTGTATAAAATCACAGGC
-74 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha H16 H16_A2281 -121 5.4 TACTGTATAAAATCACAGCA
-101 6 TACTGTTTAAACATACAGTG
Cupriavidus taiwanensis RALTA_A1825 -118 5.4 TACTGTATAAAATCACAGCA
-98 6 TACTGTTTAAACATACAGTG
Position: -40
Score: 6.1
Sequence: TACTGTACGTTTATACAGTA
Locus tag: Rmet_3545
Rmet_3545 -40 6.1 TACTGTACGTTTATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinB
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Ralstonia metallidurans CH34 Rmet_3545 -40 6.1 TACTGTACGTTTATACAGTA
Position: -42
Score: 6.3
Sequence: CACTGTATATTTATACAGTG
Locus tag: Rmet_5910
Rmet_5910 -42 6.3 CACTGTATATTTATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: H16_B2553
Ortholog function: Conserved hypothetical protein
Ralstonia metallidurans CH34 Rmet_5910 -42 6.3 CACTGTATATTTATACAGTG
Ralstonia eutropha JMP134 Reut_B5317 -51 6 GACTGTATATTCGTACAGTA
Ralstonia eutropha H16 H16_B2553 -51 6 GACTGTATATTCGTACAGTA
Cupriavidus taiwanensis RALTA_B2284 -42 6 GACTGTATATTCGTACAGTA
Position: -72
Score: 6.4
Sequence: TACTGTATAAACATACAGTA
Locus tag: Rmet_4128
Rmet_4128 -72 6.4 TACTGTATAAACATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: imuA
Ortholog function: Predicted RecA/RadA recombinase
Ralstonia solanacearum GMI1000 RS01909 -159 6.2 TACTGTATATCCATACAGTA
Ralstonia pickettii 12J Rpic_4490 -44 6.4 TACTGTATATTCATACAGTA
Ralstonia metallidurans CH34 Rmet_4128 -72 6.4 TACTGTATAAACATACAGTA
Ralstonia eutropha JMP134 Reut_B4525 91 6.3 TACTGTATAAATATACAGTT
Ralstonia eutropha H16 H16_B1060 -72 6.3 TACTGTATAAATATACAGTT
Cupriavidus taiwanensis RALTA_B0872 -72 6.3 TACTGTATAAATATACAGTT
Position: -150
Score: 6.1
Sequence: CACTGTATGTTCATACAGTA
Locus tag: Rmet_4549
Rmet_4549 -150 6.1 CACTGTATGTTCATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC subunit A
Ralstonia metallidurans CH34 Rmet_4549 -150 6.1 CACTGTATGTTCATACAGTA
Ralstonia eutropha JMP134 Reut_B4240 -160 5.6 CACTGTACGGATATACAGTC
Ralstonia eutropha H16 H16_B1571 -72 5.7 GACTGTATGGATGTACAGTG
Cupriavidus taiwanensis RALTA_B1379 -71 5.7 GACTGTATGGATGTACAGTG
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