Propagation of LexA regulog to Ralstonia metallidurans CH34
| Source regulog: | LexA - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia metallidurans CH34 |
| Orthologous TF(s) | Rmet_1981 |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -66
Score: 5.6 Sequence: GGCTGTATGGATATACAGTG
Locus tag: Rmet_0232
|
||||
| Rmet_0232 | -66 | 5.6 | GGCTGTATGGATATACAGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrD | ||||
| Ortholog function: ATP-dependent DNA helicase II | ||||
| Ralstonia solanacearum GMI1000 | RS05321 | -39 | 6 | TGCTGTATATTTATACAGTT |
| Ralstonia pickettii 12J | Rpic_4129 | -40 | 5.9 | TGCTGTATATTCATACAGTT |
| Ralstonia metallidurans CH34 | Rmet_0232 | -66 | 5.6 | GGCTGTATGGATATACAGTG |
| Ralstonia eutropha JMP134 | Reut_A0283 | -6 | 5.7 | GCCTGTATGGATATACAGTT |
| Ralstonia eutropha H16 | H16_A0305 | -68 | 5.7 | CCCTGTATGGATATACAGTT |
| Cupriavidus taiwanensis | RALTA_A0247 | -62 | 5.6 | GGCTGTATGGATATACAGTT |
|
Position: -171
Score: 6.1 Sequence: TACTGTTTTTTTATACAGTA
Locus tag: Rmet_0466
|
||||
| Rmet_0466 | -171 | 6.1 | TACTGTTTTTTTATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: Recombinase A | ||||
| Ralstonia solanacearum GMI1000 | RSc0551 | -180 | 5.5 | CACTGGTTTTTTATACAGTA |
| Ralstonia pickettii 12J | Rpic_0471 | -172 | 5.5 | CACTGGTTTTTTATACAGTA |
| Ralstonia metallidurans CH34 | Rmet_0466 | -171 | 6.1 | TACTGTTTTTTTATACAGTA |
| Ralstonia eutropha JMP134 | Reut_A0527 | -194 | 6.1 | TACTGTTTTTTTATACAGTA |
| Ralstonia eutropha H16 | H16_A0544 | -159 | 6.1 | TACTGTTTTTTTATACAGTA |
| Cupriavidus taiwanensis | RALTA_A0499 | -159 | 6.1 | TACTGTTTTTTTATACAGTA |
|
Position: -48
Score: 6.5 Sequence: TACTGTATATTTATACAGTA
Locus tag: Rmet_0742
|
||||
| Rmet_0742 | -48 | 6.5 | TACTGTATATTTATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: PF04055 | ||||
| Ortholog function: DNA repair photolyase | ||||
| Ralstonia metallidurans CH34 | Rmet_0742 | -48 | 6.5 | TACTGTATATTTATACAGTA |
| Ralstonia eutropha H16 | H16_A0887 | -44 | 6.5 | TACTGTATATATATACAGTG |
|
Position: -62
Score: 6.3 Sequence: CACTGTATATATTTACAGTA
Locus tag: Rmet_1637
|
||||
| Rmet_1637 | -62 | 6.3 | CACTGTATATATTTACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BPSS1334 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Ralstonia solanacearum GMI1000 | RS00884 | -44 | 5.9 | GCCTGTATATATTTACAGTG |
| -29 | 5.2 | CAGTGTACGTATATACAGTC | ||
| Ralstonia pickettii 12J | Rpic_4716 | -45 | 6 | AACTGTATATATTCACAGTA |
| -26 | 5.3 | AACTGTGAATTTATACAGTG | ||
| Ralstonia metallidurans CH34 | Rmet_1637 | -62 | 6.3 | CACTGTATATATTTACAGTA |
| -43 | 5.2 | AACTGTATGGATGAACAGTC | ||
| Ralstonia eutropha JMP134 | Reut_B3817 | -50 | 6.4 | TACTGTATATATTTACAGTA |
| -31 | 5.3 | ACCTGTATGGATAAACAGTG | ||
| Ralstonia eutropha H16 | H16_B0943 | -51 | 6.4 | TACTGTATATATTTACAGTA |
| -32 | 5.3 | ACCTGTATGGATGAACAGTA | ||
| Cupriavidus taiwanensis | RALTA_B0767 | -67 | 6.4 | TACTGTATATATTTACAGTA |
| -48 | 5.1 | ACCTGTATGGATGAACAGTG | ||
|
Position: -63
Score: 5.4 Sequence: TACTGTATAAAATCACAGCA
Position: -43
Score: 6 Sequence: TACTGTTTAAACATACAGTG
Locus tag: Rmet_1981
|
||||
| Rmet_1981 | -63 | 5.4 | TACTGTATAAAATCACAGCA | |
| -43 | 6 | TACTGTTTAAACATACAGTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88) | ||||
| Ralstonia solanacearum GMI1000 | RSc1304 | -44 | 5.3 | CACTGTATAAAATCACAGCA |
| -25 | 5.4 | ACCTGTTCAAATATACAGTG | ||
| Ralstonia pickettii 12J | Rpic_1179 | -44 | 5.3 | CACTGTATAAAATCACAGCA |
| -25 | 5.4 | ACCTGTTCAAATATACAGTG | ||
| Ralstonia metallidurans CH34 | Rmet_1981 | -63 | 5.4 | TACTGTATAAAATCACAGCA |
| -43 | 6 | TACTGTTTAAACATACAGTG | ||
| Ralstonia eutropha JMP134 | Reut_A2008 | -95 | 5 | TACTGTATAAAATCACAGGC |
| -74 | 6 | TACTGTTTAAACATACAGTG | ||
| Ralstonia eutropha H16 | H16_A2281 | -121 | 5.4 | TACTGTATAAAATCACAGCA |
| -101 | 6 | TACTGTTTAAACATACAGTG | ||
| Cupriavidus taiwanensis | RALTA_A1825 | -118 | 5.4 | TACTGTATAAAATCACAGCA |
| -98 | 6 | TACTGTTTAAACATACAGTG | ||
|
Position: -40
Score: 6.1 Sequence: TACTGTACGTTTATACAGTA
Locus tag: Rmet_3545
|
||||
| Rmet_3545 | -40 | 6.1 | TACTGTACGTTTATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dinB | ||||
| Ortholog function: DNA polymerase IV (EC 2.7.7.7) | ||||
| Ralstonia metallidurans CH34 | Rmet_3545 | -40 | 6.1 | TACTGTACGTTTATACAGTA |
|
Position: -42
Score: 6.3 Sequence: CACTGTATATTTATACAGTG
Locus tag: Rmet_5910
|
||||
| Rmet_5910 | -42 | 6.3 | CACTGTATATTTATACAGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: H16_B2553 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Ralstonia metallidurans CH34 | Rmet_5910 | -42 | 6.3 | CACTGTATATTTATACAGTG |
| Ralstonia eutropha JMP134 | Reut_B5317 | -51 | 6 | GACTGTATATTCGTACAGTA |
| Ralstonia eutropha H16 | H16_B2553 | -51 | 6 | GACTGTATATTCGTACAGTA |
| Cupriavidus taiwanensis | RALTA_B2284 | -42 | 6 | GACTGTATATTCGTACAGTA |
|
Position: -72
Score: 6.4 Sequence: TACTGTATAAACATACAGTA
Locus tag: Rmet_4128
|
||||
| Rmet_4128 | -72 | 6.4 | TACTGTATAAACATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: imuA | ||||
| Ortholog function: Predicted RecA/RadA recombinase | ||||
| Ralstonia solanacearum GMI1000 | RS01909 | -159 | 6.2 | TACTGTATATCCATACAGTA |
| Ralstonia pickettii 12J | Rpic_4490 | -44 | 6.4 | TACTGTATATTCATACAGTA |
| Ralstonia metallidurans CH34 | Rmet_4128 | -72 | 6.4 | TACTGTATAAACATACAGTA |
| Ralstonia eutropha JMP134 | Reut_B4525 | 91 | 6.3 | TACTGTATAAATATACAGTT |
| Ralstonia eutropha H16 | H16_B1060 | -72 | 6.3 | TACTGTATAAATATACAGTT |
| Cupriavidus taiwanensis | RALTA_B0872 | -72 | 6.3 | TACTGTATAAATATACAGTT |
|
Position: -150
Score: 6.1 Sequence: CACTGTATGTTCATACAGTA
Locus tag: Rmet_4549
|
||||
| Rmet_4549 | -150 | 6.1 | CACTGTATGTTCATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrA | ||||
| Ortholog function: Excinuclease ABC subunit A | ||||
| Ralstonia metallidurans CH34 | Rmet_4549 | -150 | 6.1 | CACTGTATGTTCATACAGTA |
| Ralstonia eutropha JMP134 | Reut_B4240 | -160 | 5.6 | CACTGTACGGATATACAGTC |
| Ralstonia eutropha H16 | H16_B1571 | -72 | 5.7 | GACTGTATGGATGTACAGTG |
| Cupriavidus taiwanensis | RALTA_B1379 | -71 | 5.7 | GACTGTATGGATGTACAGTG |