Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Ralstonia metallidurans CH34

Reference regulog properties
Source regulog: Fur - Ralstonia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia metallidurans CH34
Orthologous TF(s) Rmet_2976, Rmet_5746
Regulated genes 15
Built upon 94 sites [see more]
Predicted regulatory interactions in Ralstonia metallidurans CH34
Locus tag Position Score Sequence
Position: -91
Score: 5.2
Sequence: AATGGGAATTGTTATCATT
Locus tag: Rmet_0247
Rmet_0247 -91 5.2 AATGGGAATTGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Ralstonia solanacearum GMI1000 RSc0349 -77 5 AACAAGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_0205 -75 5 AACAAGAATTGTTCTCATT
Ralstonia metallidurans CH34 Rmet_0247 -91 5.2 AATGGGAATTGTTATCATT
Ralstonia eutropha JMP134 Reut_A0298 -1 5.2 AAtGggAATTgTTATCaTT
Ralstonia eutropha H16 H16_A0327 -89 5.2 AATGGGAATTGTTATCATT
Cupriavidus taiwanensis RALTA_A0266 -56 5.2 AATGGGAATTGTTATCATT
Position: -120
Score: 5
Sequence: ATTGATACTCATTATCATT
Locus tag: Rmet_0720
Rmet_0720 -120 5 ATTGATACTCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A0796
Ortholog function: putative exported protein
Ralstonia metallidurans CH34 Rmet_0720 -120 5 ATTGATACTCATTATCATT
Ralstonia eutropha JMP134 Reut_A2571 -90 5.2 ATTGCGAATCATTATCATT
Ralstonia eutropha H16 H16_A0796 -87 5.5 ATTGAGAATCATTATTATT
Cupriavidus taiwanensis RALTA_A0777 -84 5.6 ATTGAGAATCATTATCATT
Position: -302
Score: 4.7
Sequence: AATGCGAATAATTTACATT
Locus tag: Rmet_0837
Rmet_0837 -302 4.7 AATGCGAATAATTTACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Rmet_0837
Ortholog function: TonB-dependent siderophore transporter
Ralstonia metallidurans CH34 Rmet_0837 -302 4.7 AATGCGAATAATTTACATT
Position: -167
Score: 4.8
Sequence: AATGCAAATGATTAGTATT
Locus tag: Rmet_1105
Rmet_1105 -167 4.8 AATGCAAATGATTAGTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_B0117
Ortholog function: putative component of iron permease
Ralstonia metallidurans CH34 Rmet_1105 -167 4.8 AATGCAAATGATTAGTATT
Position: -56
Score: 4.6
Sequence: AATGATAATAGGTCGCATT
Locus tag: Rmet_1120
Rmet_1120 -56 4.6 AATGATAATAGGTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fecI
Ortholog function: Probable RNA polymerase sigma factor FecI
Ralstonia metallidurans CH34 Rmet_1120 -56 4.6 AATGATAATAGGTCGCATT
Position: -78
Score: 5.3
Sequence: AATACGAATCATTATTATT
Locus tag: Rmet_1367
Rmet_1367 -78 5.3 AATACGAATCATTATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A1451
Ortholog function: putative transmembrane lipoprotein
Ralstonia metallidurans CH34 Rmet_1367 -78 5.3 AATACGAATCATTATTATT
Ralstonia eutropha H16 H16_A1451 -46 5 AATGCGAATCATTACCATT
Cupriavidus taiwanensis RALTA_A1365 -46 5.4 AATGCGAATCATTATTATT
Position: -54
Score: 4.6
Sequence: AATACGAATTGTTCGTATT
Locus tag: Rmet_1819
Rmet_1819 -54 4.6 AATACGAATTGTTCGTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_B2476
Ortholog function: Putative TonB-dependent siderophore transporter
Ralstonia metallidurans CH34 Rmet_1819 -54 4.6 AATACGAATTGTTCGTATT
Ralstonia eutropha H16 H16_B2476 -73 5 AATGCGAATTATTCGCATT
Cupriavidus taiwanensis RALTA_B2199 -67 5 AATGCGAATTATTCGCATT
Position: -73
Score: 5.6
Sequence: AATGATAACAATTCTCATT
Locus tag: Rmet_2280
Rmet_2280 -73 5.6 AATGATAACAATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: hemin uptake protein
Ralstonia metallidurans CH34 Rmet_2280 -73 5.6 AATGATAACAATTCTCATT
Ralstonia eutropha JMP134 Reut_A2238 -107 5.1 AATGGTAATGGTTCTCATT
Ralstonia eutropha H16 H16_A2535 -81 5.6 AATGATAACAATTCTCATT
Cupriavidus taiwanensis RALTA_A2040 -108 5.6 AATGATAACAATTCTCATT
Position: -42
Score: 4.2
Sequence: AACGCGAATCGTTCGCATT
Locus tag: Rmet_3077
Rmet_3077 -42 4.2 AACGCGAATCGTTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Reut_A2876
Ortholog function: putative TonB-dependent siderophore transporter
Ralstonia pickettii 12J Rpic_3802 -136 4.8 ATTGAGAATCGTTGTCATT
Ralstonia metallidurans CH34 Rmet_3077 -42 4.2 AACGCGAATCGTTCGCATT
Ralstonia eutropha JMP134 Reut_A2876 -136 4.4 AACGCAAATCATTCGCATT
Position: -56
Score: 4.4
Sequence: AATTACAATCATTCGCATT
Locus tag: pMOL30_093
pMOL30_093 -56 4.4 AATTACAATCATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftr1
Ortholog function: iron permease FTR1
Ralstonia pickettii 12J Rpic_1641 -55 4.8 AATTACAATCATTCTCATT
Ralstonia pickettii 12J Rpic_1817 -55 4.8 AATTACAATCATTCTCATT
Ralstonia metallidurans CH34 pMOL30_093 -56 4.4 AATTACAATCATTCGCATT
Ralstonia metallidurans CH34 Rmet_5945 -62 4.2 AAATAGAATTACAATCATT
-56 4.4 AATTACAATCATTCGCATT
Position: -56
Score: 4.4
Sequence: AATTACAATCATTCGCATT
Locus tag: Rmet_5945
Rmet_5945 -56 4.4 AATTACAATCATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftr1
Ortholog function: iron permease FTR1
Ralstonia pickettii 12J Rpic_1641 -55 4.8 AATTACAATCATTCTCATT
Ralstonia pickettii 12J Rpic_1817 -55 4.8 AATTACAATCATTCTCATT
Ralstonia metallidurans CH34 pMOL30_093 -56 4.4 AATTACAATCATTCGCATT
Ralstonia metallidurans CH34 Rmet_5945 -62 4.2 AAATAGAATTACAATCATT
-56 4.4 AATTACAATCATTCGCATT
Position: -82
Score: 4.2
Sequence: ATCGAGAACGATTTCTATT
Locus tag: Rmet_5891
Rmet_5891 -82 4.2 ATCGAGAACGATTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Ralstonia solanacearum GMI1000 RS03714 -66 4.9 AATGAAAACGATTCGCATT
Ralstonia pickettii 12J Rpic_3949 -61 4.9 AATGAAAACGATTCGCATT
Ralstonia metallidurans CH34 Rmet_5891 -82 4.2 ATCGAGAACGATTTCTATT
Ralstonia eutropha JMP134 Reut_B5430 -80 5.2 AATGAAAACGATTTTCATT
Ralstonia eutropha H16 H16_B0085 -80 5.2 AATGAAAACGATTTTCATT
Cupriavidus taiwanensis RALTA_B0077 -83 5.2 AATGAAAACGATTTTCATT
Position: -66
Score: 5.1
Sequence: AATACGAATCGTTATCATT
Locus tag: Rmet_5373
Rmet_5373 -66 5.1 AATACGAATCGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSp0244
Ortholog function: TonB-dependent outer-membrane hemin transporter
Ralstonia metallidurans CH34 Rmet_5373 -66 5.1 AATACGAATCGTTATCATT
Position: -66
Score: 4.7
Sequence: AATGCGAACCATTCGCATT
Locus tag: Rmet_5806
Rmet_5806 -66 4.7 AATGCGAACCATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fecA
Ortholog function: TonB-dependent outer membrane transporter for Fe(III)-dicitrate
Ralstonia metallidurans CH34 Rmet_5806 -66 4.7 AATGCGAACCATTCGCATT
Ralstonia metallidurans CH34 Rmet_5807 -107 4.6 ATTGCAAATCATTCCTATT
Cupriavidus taiwanensis RALTA_B2301 -101 4.2 TTTGAGAATCACTCGCATT
Position: -107
Score: 4.6
Sequence: ATTGCAAATCATTCCTATT
Locus tag: Rmet_5807
Rmet_5807 -107 4.6 ATTGCAAATCATTCCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fecA
Ortholog function: TonB-dependent outer membrane transporter for Fe(III)-dicitrate
Ralstonia metallidurans CH34 Rmet_5806 -66 4.7 AATGCGAACCATTCGCATT
Ralstonia metallidurans CH34 Rmet_5807 -107 4.6 ATTGCAAATCATTCCTATT
Cupriavidus taiwanensis RALTA_B2301 -101 4.2 TTTGAGAATCACTCGCATT
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