Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Ralstonia metallidurans CH34

Reference regulog properties
Source regulog: NsrR - Ralstonia
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia metallidurans CH34
Orthologous TF(s) Rmet_3383
Regulated genes 4
Built upon 23 sites [see more]
Predicted regulatory interactions in Ralstonia metallidurans CH34
Locus tag Position Score Sequence
Position: 32
Score: 6
Sequence: CATGCATTTTACATGCATG
Locus tag: Rmet_3382
Rmet_3382 32 6 CATGCATTTTACATGCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Ralstonia eutropha H16 H16_A3533 -41 5.6 CATGCATTTAATTTGCATG
Cupriavidus taiwanensis RALTA_A2986 -40 4.6 CATGCATATTTTCTGCATG
Ralstonia metallidurans CH34 Rmet_3382 32 6 CATGCATTTTACATGCATG
Ralstonia eutropha JMP134 Reut_A3219 -41 5.5 CATGCATTTTGTTTGCATG
Ralstonia solanacearum GMI1000 RS01706 -133 4.3 GTGGTATTTAATATGCATG
Ralstonia pickettii 12J Rpic_3609 -32 3.6 GTTGCATATTTCACGCATA
Position: -25
Score: 5.5
Sequence: CTTGCATTGGCGATGCACG
Locus tag: Rmet_3383
Rmet_3383 -25 5.5 CTTGCATTGGCGATGCACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nsrR
Ortholog function: Nitrite-sensitive transcriptional repressor NsrR
Ralstonia eutropha H16 H16_A3534 -39 5.3 CTTGCATCCTGGATGCATC
Cupriavidus taiwanensis RALTA_A2987 -40 5.5 CTTGCATCCTAGATGCATC
Ralstonia metallidurans CH34 Rmet_3383 -25 5.5 CTTGCATTGGCGATGCACG
Ralstonia eutropha JMP134 Reut_A3220 -39 4.6 CTTGCATTTGAAATGCCGC
Position: -53
Score: 5.6
Sequence: GATGCAATTTAAATGCATC
Locus tag: Rmet_4922
Rmet_4922 -53 5.6 GATGCAATTTAAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF10006
Ortholog function: hypothetical protein, PF10006
Ralstonia metallidurans CH34 Rmet_4922 -53 5.6 GATGCAATTTAAATGCATC
Ralstonia solanacearum GMI1000 RS03037 -103 3.7 CAAGTATCTGATATACATC
-53 5.8 GATGCATTCTCAATGCATC
Ralstonia pickettii 12J Rpic_4014 -101 4.3 CAAGCATCTGATATACATC
-51 5 GTTGCATCCTTAATGCATC
Position: -62
Score: 5.6
Sequence: ATTGCATTTAAGATGCATG
Locus tag: Rmet_5307
Rmet_5307 -62 5.6 ATTGCATTTAAGATGCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS
Ortholog function: NnrS protein involved in response to NO
Ralstonia metallidurans CH34 Rmet_5307 -62 5.6 ATTGCATTTAAGATGCATG
Ralstonia solanacearum GMI1000 RS01707 -133 4.3 GTGGTATTTAATATGCATG
Ralstonia pickettii 12J Rpic_3610 -32 3.6 GTTGCATATTTCACGCATA
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