Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Ralstonia metallidurans CH34

Reference regulog properties
Source regulog: NtrC - Ralstonia
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia metallidurans CH34
Orthologous TF(s) Rmet_2966, Rmet_2059
Regulated genes 5
Built upon 28 sites [see more]
Predicted regulatory interactions in Ralstonia metallidurans CH34
Locus tag Position Score Sequence
Position: -193
Score: 4.4
Sequence: TGCACCAGGAAGGGGCG
Locus tag: Rmet_2061
Rmet_2061 -193 4.4 TGCACCAGGAAGGGGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrZ
Ortholog function: Conserved hypothetical signal peptide protein
Ralstonia solanacearum GMI1000 RS02776 -334 5.1 CGCACTATGATGGTGCG
Ralstonia pickettii 12J Rpic_1087 -346 4.7 TGCACCGTTTATGTGCG
Ralstonia metallidurans CH34 Rmet_2061 -193 4.4 TGCACCAGGAAGGGGCG
Ralstonia eutropha JMP134 Reut_A2056 -80 4.6 AGCACCATCAAGGGGCG
Ralstonia eutropha H16 H16_A2334 -95 4.7 TGCACCAGAAAGGGGCG
Cupriavidus taiwanensis RALTA_A1879 -190 4.5 TGCACCACAAGGGGGCG
Position: -297
Score: 4.9
Sequence: CGCACCGTTATGGTGTT
Locus tag: Rmet_2062
Rmet_2062 -297 4.9 CGCACCGTTATGGTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Ralstonia solanacearum GMI1000 RSc1258 -334 5.1 CGCACTATGATGGTGCG
Ralstonia pickettii 12J Rpic_1086 -346 4.7 TGCACCGTTTATGTGCG
Ralstonia metallidurans CH34 Rmet_2062 -297 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha JMP134 Reut_A2057 -319 4.9 CGCACCGTTATGGTGTT
Ralstonia eutropha H16 H16_A2335 -295 4.7 TGCACCATTGTGGTGTT
Cupriavidus taiwanensis RALTA_A1880 -334 4.8 CGCACTAATGCGGTGCG
-304 4.7 TGCACCATGATGGTGTT
Position: -218
Score: 4.5
Sequence: CGCAGCATTGCGGGGCA
Locus tag: Rmet_3158
Rmet_3158 -218 4.5 CGCAGCATTGCGGGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: Dipeptide ABC transporter, substrate-binding component
Ralstonia solanacearum GMI1000 RSc2870 -193 4.6 TGCACCAATTTGTGGCG
Ralstonia metallidurans CH34 Rmet_3158 -218 4.5 CGCAGCATTGCGGGGCA
-91 4.3 CGCACCAAAATGCGGCC
Ralstonia eutropha JMP134 Reut_A3006 -93 4.9 CGCACCAAAATGCAGCG
Ralstonia eutropha H16 H16_A3298 -93 4.7 CGCACCAAAACGCAGCG
Cupriavidus taiwanensis RALTA_A2753 -93 4.6 CGCACCAAAAAGCAGCG
Position: -185
Score: 4.5
Sequence: TGCGCCATCACGGCGCA
Locus tag: Rmet_4750
Rmet_4750 -185 4.5 TGCGCCATCACGGCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Ralstonia pickettii 12J Rpic_0087 -137 4.9 CGCACGACCATGGTGCG
Ralstonia metallidurans CH34 Rmet_4750 -185 4.5 TGCGCCATCACGGCGCA
Ralstonia eutropha JMP134 Reut_B4038 -232 4.7 TGCACCACTAAGGTTCA
-91 4.6 TCCACCATGAAGGTGCA
Ralstonia eutropha H16 H16_B1234 -221 5.1 CGCACCATAACGGTTCA
-188 4.9 CGCGCCATTTTGGCGCA
Cupriavidus taiwanensis RALTA_B1139 -187 4.9 CGCGCCATTTTGGCGCA
Position: -284
Score: 5
Sequence: CGCACCATTGCCGTGCG
Locus tag: Rmet_4817
Rmet_4817 -284 5 CGCACCATTGCCGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Ralstonia solanacearum GMI1000 RS03167 -258 4.8 TGCACCGAAACCGTGCA
Ralstonia pickettii 12J Rpic_4163 -272 4.4 TGCACCGAAAGCGTGCG
Ralstonia metallidurans CH34 Rmet_4817 -284 5 CGCACCATTGCCGTGCG
Ralstonia eutropha JMP134 Reut_B4859 -271 4.2 CGCACCATGACTGTGCC
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