Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Cupriavidus taiwanensis

Reference regulog properties
Source regulog: LexA - Ralstonia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Cupriavidus taiwanensis
Orthologous TF(s) RALTA_A1825
Regulated genes 11
Built upon 62 sites [see more]
Predicted regulatory interactions in Cupriavidus taiwanensis
Locus tag Position Score Sequence
Position: -62
Score: 5.6
Sequence: GGCTGTATGGATATACAGTT
Locus tag: RALTA_A0247
RALTA_A0247 -62 5.6 GGCTGTATGGATATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrD
Ortholog function: ATP-dependent DNA helicase II
Ralstonia solanacearum GMI1000 RS05321 -39 6 TGCTGTATATTTATACAGTT
Ralstonia pickettii 12J Rpic_4129 -40 5.9 TGCTGTATATTCATACAGTT
Ralstonia metallidurans CH34 Rmet_0232 -66 5.6 GGCTGTATGGATATACAGTG
Ralstonia eutropha JMP134 Reut_A0283 -6 5.7 GCCTGTATGGATATACAGTT
Ralstonia eutropha H16 H16_A0305 -68 5.7 CCCTGTATGGATATACAGTT
Cupriavidus taiwanensis RALTA_A0247 -62 5.6 GGCTGTATGGATATACAGTT
Position: -159
Score: 6.1
Sequence: TACTGTTTTTTTATACAGTA
Locus tag: RALTA_A0499
RALTA_A0499 -159 6.1 TACTGTTTTTTTATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Ralstonia solanacearum GMI1000 RSc0551 -180 5.5 CACTGGTTTTTTATACAGTA
Ralstonia pickettii 12J Rpic_0471 -172 5.5 CACTGGTTTTTTATACAGTA
Ralstonia metallidurans CH34 Rmet_0466 -171 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha JMP134 Reut_A0527 -194 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha H16 H16_A0544 -159 6.1 TACTGTTTTTTTATACAGTA
Cupriavidus taiwanensis RALTA_A0499 -159 6.1 TACTGTTTTTTTATACAGTA
Position: -33
Score: 5.9
Sequence: TACTGTACATCCATACAGTA
Locus tag: RALTA_A1272
RALTA_A1272 -33 5.9 TACTGTACATCCATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: H16_A1352
Ortholog function: Conserved hypothetical protein
Ralstonia metallidurans CH34 Rmet_1177 -70 6.2 TACTGTACATTCATACAGTA
Ralstonia eutropha JMP134 Reut_A1285 125 5.9 TACTGTACATCCATACAGTA
Ralstonia eutropha H16 H16_A1352 41 5.9 TACTGTACATCCATACAGTA
Cupriavidus taiwanensis RALTA_A1272 -33 5.9 TACTGTACATCCATACAGTA
Position: -118
Score: 5.4
Sequence: TACTGTATAAAATCACAGCA
Position: -98
Score: 6
Sequence: TACTGTTTAAACATACAGTG
Locus tag: RALTA_A1825
RALTA_A1825 -118 5.4 TACTGTATAAAATCACAGCA
-98 6 TACTGTTTAAACATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Ralstonia solanacearum GMI1000 RSc1304 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia pickettii 12J Rpic_1179 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia metallidurans CH34 Rmet_1981 -63 5.4 TACTGTATAAAATCACAGCA
-43 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha JMP134 Reut_A2008 -95 5 TACTGTATAAAATCACAGGC
-74 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha H16 H16_A2281 -121 5.4 TACTGTATAAAATCACAGCA
-101 6 TACTGTTTAAACATACAGTG
Cupriavidus taiwanensis RALTA_A1825 -118 5.4 TACTGTATAAAATCACAGCA
-98 6 TACTGTTTAAACATACAGTG
Position: -68
Score: 6.3
Sequence: CACTGTATATTCATACAGTA
Locus tag: RALTA_A3210
RALTA_A3210 -68 6.3 CACTGTATATTCATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinD
Ortholog function: DNA-damage-inducible protein, part of SOS response
Cupriavidus taiwanensis RALTA_A3210 -68 6.3 CACTGTATATTCATACAGTA
Position: -41
Score: 6.3
Sequence: AACTGTATAAATATACAGTA
Locus tag: pRALTA_0101
pRALTA_0101 -41 6.3 AACTGTATAAATATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: imuA
Ortholog function: Predicted RecA/RadA recombinase
Cupriavidus taiwanensis pRALTA_0101 -41 6.3 AACTGTATAAATATACAGTA
Position: -67
Score: 6.4
Sequence: TACTGTATATATTTACAGTA
Locus tag: RALTA_B0767
RALTA_B0767 -67 6.4 TACTGTATATATTTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BPSS1334
Ortholog function: Conserved hypothetical protein
Ralstonia solanacearum GMI1000 RS00884 -44 5.9 GCCTGTATATATTTACAGTG
-29 5.2 CAGTGTACGTATATACAGTC
Ralstonia pickettii 12J Rpic_4716 -45 6 AACTGTATATATTCACAGTA
-26 5.3 AACTGTGAATTTATACAGTG
Ralstonia metallidurans CH34 Rmet_1637 -62 6.3 CACTGTATATATTTACAGTA
-43 5.2 AACTGTATGGATGAACAGTC
Ralstonia eutropha JMP134 Reut_B3817 -50 6.4 TACTGTATATATTTACAGTA
-31 5.3 ACCTGTATGGATAAACAGTG
Ralstonia eutropha H16 H16_B0943 -51 6.4 TACTGTATATATTTACAGTA
-32 5.3 ACCTGTATGGATGAACAGTA
Cupriavidus taiwanensis RALTA_B0767 -67 6.4 TACTGTATATATTTACAGTA
-48 5.1 ACCTGTATGGATGAACAGTG
Position: -72
Score: 6.3
Sequence: TACTGTATAAATATACAGTT
Locus tag: RALTA_B0872
RALTA_B0872 -72 6.3 TACTGTATAAATATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: imuA
Ortholog function: Predicted RecA/RadA recombinase
Ralstonia solanacearum GMI1000 RS01909 -159 6.2 TACTGTATATCCATACAGTA
Ralstonia pickettii 12J Rpic_4490 -44 6.4 TACTGTATATTCATACAGTA
Ralstonia metallidurans CH34 Rmet_4128 -72 6.4 TACTGTATAAACATACAGTA
Ralstonia eutropha JMP134 Reut_B4525 91 6.3 TACTGTATAAATATACAGTT
Ralstonia eutropha H16 H16_B1060 -72 6.3 TACTGTATAAATATACAGTT
Cupriavidus taiwanensis RALTA_B0872 -72 6.3 TACTGTATAAATATACAGTT
Position: -88
Score: 6.2
Sequence: TACTGTATATTTGTACAGTT
Locus tag: RALTA_B1170
RALTA_B1170 -88 6.2 TACTGTATATTTGTACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF06733
Ortholog function: DinG family ATP-dependent helicase CPE1197
Ralstonia eutropha JMP134 Reut_B5827 -44 6.1 GACTGTATATTCATACAGTT
Ralstonia eutropha H16 H16_B1265 -103 6.3 TACTGTATATTCATACAGTT
Cupriavidus taiwanensis RALTA_B1170 -88 6.2 TACTGTATATTTGTACAGTT
Position: -71
Score: 5.7
Sequence: GACTGTATGGATGTACAGTG
Locus tag: RALTA_B1379
RALTA_B1379 -71 5.7 GACTGTATGGATGTACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC subunit A
Ralstonia metallidurans CH34 Rmet_4549 -150 6.1 CACTGTATGTTCATACAGTA
Ralstonia eutropha JMP134 Reut_B4240 -160 5.6 CACTGTACGGATATACAGTC
Ralstonia eutropha H16 H16_B1571 -72 5.7 GACTGTATGGATGTACAGTG
Cupriavidus taiwanensis RALTA_B1379 -71 5.7 GACTGTATGGATGTACAGTG
Position: -42
Score: 6
Sequence: GACTGTATATTCGTACAGTA
Locus tag: RALTA_B2284
RALTA_B2284 -42 6 GACTGTATATTCGTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: H16_B2553
Ortholog function: Conserved hypothetical protein
Ralstonia metallidurans CH34 Rmet_5910 -42 6.3 CACTGTATATTTATACAGTG
Ralstonia eutropha JMP134 Reut_B5317 -51 6 GACTGTATATTCGTACAGTA
Ralstonia eutropha H16 H16_B2553 -51 6 GACTGTATATTCGTACAGTA
Cupriavidus taiwanensis RALTA_B2284 -42 6 GACTGTATATTCGTACAGTA
© 2009-2020 RegPrecise