Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fur regulog to Cupriavidus taiwanensis

Reference regulog properties
Source regulog: Fur - Ralstonia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Cupriavidus taiwanensis
Orthologous TF(s) RALTA_B0107, RALTA_A2618
Regulated genes 13
Built upon 94 sites [see more]
Predicted regulatory interactions in Cupriavidus taiwanensis
Locus tag Position Score Sequence
Position: -56
Score: 5.2
Sequence: AATGGGAATTGTTATCATT
Locus tag: RALTA_A0266
RALTA_A0266 -56 5.2 AATGGGAATTGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Ralstonia solanacearum GMI1000 RSc0349 -77 5 AACAAGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_0205 -75 5 AACAAGAATTGTTCTCATT
Ralstonia metallidurans CH34 Rmet_0247 -91 5.2 AATGGGAATTGTTATCATT
Ralstonia eutropha JMP134 Reut_A0298 -1 5.2 AAtGggAATTgTTATCaTT
Ralstonia eutropha H16 H16_A0327 -89 5.2 AATGGGAATTGTTATCATT
Cupriavidus taiwanensis RALTA_A0266 -56 5.2 AATGGGAATTGTTATCATT
Position: -84
Score: 5.6
Sequence: ATTGAGAATCATTATCATT
Locus tag: RALTA_A0777
RALTA_A0777 -84 5.6 ATTGAGAATCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A0796
Ortholog function: putative exported protein
Ralstonia metallidurans CH34 Rmet_0720 -120 5 ATTGATACTCATTATCATT
Ralstonia eutropha JMP134 Reut_A2571 -90 5.2 ATTGCGAATCATTATCATT
Ralstonia eutropha H16 H16_A0796 -87 5.5 ATTGAGAATCATTATTATT
Cupriavidus taiwanensis RALTA_A0777 -84 5.6 ATTGAGAATCATTATCATT
Position: -46
Score: 5.4
Sequence: AATGCGAATCATTATTATT
Locus tag: RALTA_A1365
RALTA_A1365 -46 5.4 AATGCGAATCATTATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A1451
Ortholog function: putative transmembrane lipoprotein
Ralstonia metallidurans CH34 Rmet_1367 -78 5.3 AATACGAATCATTATTATT
Ralstonia eutropha H16 H16_A1451 -46 5 AATGCGAATCATTACCATT
Cupriavidus taiwanensis RALTA_A1365 -46 5.4 AATGCGAATCATTATTATT
Position: -108
Score: 5.6
Sequence: AATGATAACAATTCTCATT
Locus tag: RALTA_A2040
RALTA_A2040 -108 5.6 AATGATAACAATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: hemin uptake protein
Ralstonia metallidurans CH34 Rmet_2280 -73 5.6 AATGATAACAATTCTCATT
Ralstonia eutropha JMP134 Reut_A2238 -107 5.1 AATGGTAATGGTTCTCATT
Ralstonia eutropha H16 H16_A2535 -81 5.6 AATGATAACAATTCTCATT
Cupriavidus taiwanensis RALTA_A2040 -108 5.6 AATGATAACAATTCTCATT
Position: -92
Score: 4.7
Sequence: AATAGGAATAATTCGCAAT
Locus tag: RALTA_A2655
RALTA_A2655 -92 4.7 AATAGGAATAATTCGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A3182
Ortholog function: putative iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS02469 -153 5.1 AATGGGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_4266 -100 5.1 AATAGGAATTGTTCTCATT
Ralstonia eutropha JMP134 Reut_A2878 -51 5 AATGATAATGCTTCGCATT
Ralstonia eutropha H16 H16_A3182 -153 4.7 AATAGGAATAATTCGCAAT
Cupriavidus taiwanensis RALTA_A2655 -92 4.7 AATAGGAATAATTCGCAAT
Position: -83
Score: 5.2
Sequence: AATGAAAACGATTTTCATT
Locus tag: RALTA_B0077
RALTA_B0077 -83 5.2 AATGAAAACGATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Ralstonia solanacearum GMI1000 RS03714 -66 4.9 AATGAAAACGATTCGCATT
Ralstonia pickettii 12J Rpic_3949 -61 4.9 AATGAAAACGATTCGCATT
Ralstonia metallidurans CH34 Rmet_5891 -82 4.2 ATCGAGAACGATTTCTATT
Ralstonia eutropha JMP134 Reut_B5430 -80 5.2 AATGAAAACGATTTTCATT
Ralstonia eutropha H16 H16_B0085 -80 5.2 AATGAAAACGATTTTCATT
Cupriavidus taiwanensis RALTA_B0077 -83 5.2 AATGAAAACGATTTTCATT
Position: -157
Score: 5.2
Sequence: AATGCGAATTGTTATCATT
Locus tag: RALTA_B0125
RALTA_B0125 -157 5.2 AATGCGAATTGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_B0117
Ortholog function: putative component of iron permease
Cupriavidus taiwanensis RALTA_B0125 -157 5.2 AATGCGAATTGTTATCATT
Position: -70
Score: 5.1
Sequence: ATCGAGAATCATTATCATT
Locus tag: RALTA_B0897
RALTA_B0897 -70 5.1 ATCGAGAATCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aleB
Ortholog function: putative iron-regulated TonB-dependent siderophore transporter
Ralstonia solanacearum GMI1000 RS00873 -237 5.6 AATGAGAATTATTCTCAAT
-53 5 AATGAGAATCATTCTTGAT
Ralstonia metallidurans CH34 Rmet_1118 -56 4.6 AATGATAATAGGTCGCATT
Ralstonia eutropha H16 H16_B1489 -80 4.8 AATAGGAATCATTCTGATT
Cupriavidus taiwanensis RALTA_B0897 -70 5.1 ATCGAGAATCATTATCATT
Position: -84
Score: 4.2
Sequence: ATCACGAATCATTCCTATT
Locus tag: RALTA_B0923
RALTA_B0923 -84 4.2 ATCACGAATCATTCCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA1
Ortholog function: TonB-dependent siderophore transporter, hydroxomate-type
Ralstonia eutropha H16 H16_B1100 -84 4.7 ATTACGAATTATTCGCATT
Cupriavidus taiwanensis RALTA_B0923 -84 4.2 ATCACGAATCATTCCTATT
Position: -57
Score: 5.3
Sequence: AACAAGAATTATTCTCATT
Locus tag: RALTA_B1494
RALTA_B1494 -57 5.3 AACAAGAATTATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuA3
Ortholog function: TonB-dependent siderophore transporter, hydroxamate-type
Ralstonia eutropha H16 H16_B1976 -223 4.9 AATACAAACCATTCTCATT
Cupriavidus taiwanensis RALTA_B1494 -57 5.3 AACAAGAATTATTCTCATT
Position: -153
Score: 5
Sequence: TATGAGAATGATTGTTATT
Locus tag: RALTA_B1811
RALTA_B1811 -153 5 TATGAGAATGATTGTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fepA
Ortholog function: TonB-dependent outer membrane iron transport protein
Ralstonia eutropha H16 H16_B2095 -129 5 TATGAGAATGATTGTTATT
Cupriavidus taiwanensis RALTA_B1811 -153 5 TATGAGAATGATTGTTATT
Position: -67
Score: 5
Sequence: AATGCGAATTATTCGCATT
Locus tag: RALTA_B2199
RALTA_B2199 -67 5 AATGCGAATTATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_B2476
Ortholog function: Putative TonB-dependent siderophore transporter
Ralstonia metallidurans CH34 Rmet_1819 -54 4.6 AATACGAATTGTTCGTATT
Ralstonia eutropha H16 H16_B2476 -73 5 AATGCGAATTATTCGCATT
Cupriavidus taiwanensis RALTA_B2199 -67 5 AATGCGAATTATTCGCATT
Position: -101
Score: 4.2
Sequence: TTTGAGAATCACTCGCATT
Locus tag: RALTA_B2301
RALTA_B2301 -101 4.2 TTTGAGAATCACTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fecA
Ortholog function: TonB-dependent outer membrane transporter for Fe(III)-dicitrate
Ralstonia metallidurans CH34 Rmet_5806 -66 4.7 AATGCGAACCATTCGCATT
Ralstonia metallidurans CH34 Rmet_5807 -107 4.6 ATTGCAAATCATTCCTATT
Cupriavidus taiwanensis RALTA_B2301 -101 4.2 TTTGAGAATCACTCGCATT
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