Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PsrA regulog to Ralstonia pickettii 12D

Reference regulog properties
Source regulog: PsrA - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia pickettii 12D
Orthologous TF(s) Rpic12D_0433
Regulated genes 2
Built upon 9 sites [see more]
Predicted regulatory interactions in Ralstonia pickettii 12D
Locus tag Position Score Sequence
Position: -121
Score: 4.5
Sequence: TTTCAAACGTCTGTTCCTAA
Locus tag: Rpic12D_0433
Rpic12D_0433 -121 4.5 TTTCAAACGTCTGTTCCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: Transcriptional regulator for fatty acid degradation PsrA, TetR family
Ralstonia solanacearum GMI1000 RS04928 -122 4.6 TTTAAAACATCCGTTCCTAA
Ralstonia pickettii 12J Rpic_0418 -121 4.5 TTTCAAACGTCTGTTCCTAA
Ralstonia eutropha JMP134 Reut_A3446 -120 3.6 ATTAGAGCAGGCATTCGAAT
Ralstonia eutropha H16 H16_A3736 -104 4 CTTCGTACAGCTGTTTCAAG
Cupriavidus taiwanensis RALTA_A3194 -105 4 CTTCGTACAGCTGTTTCAAG
Position: -122
Score: 3.5
Sequence: ATTTAACTGGCTTTTAGCAT
Locus tag: Rpic12D_0983
Rpic12D_0983 -122 3.5 ATTTAACTGGCTTTTAGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acpP
Ortholog function: Acyl carrier protein
Ralstonia metallidurans CH34 Rmet_2427 -226 2.5 CATCAAACGCGGGTATGATG
Ralstonia eutropha JMP134 Reut_A2262 -198 2.5 GATCAAACGCGGGTATGATG
Ralstonia eutropha H16 H16_A2566 -200 2.5 CATCAAACGCGGGTATGATG
Cupriavidus taiwanensis RALTA_A2069 -201 2.5 CATCAAACGCGGGTATGATG
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