Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fur regulog to Ralstonia pickettii 12D

Reference regulog properties
Source regulog: Fur - Ralstonia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia pickettii 12D
Orthologous TF(s) Rpic12D_4057, Rpic12D_2576
Regulated genes 10
Built upon 94 sites [see more]
Predicted regulatory interactions in Ralstonia pickettii 12D
Locus tag Position Score Sequence
Position: -55
Score: 4.8
Sequence: AATTACAATCATTCTCATT
Locus tag: Rpic12D_5282
Rpic12D_5282 -55 4.8 AATTACAATCATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftr1
Ortholog function: iron permease FTR1
Ralstonia pickettii 12J Rpic_1641 -55 4.8 AATTACAATCATTCTCATT
Ralstonia pickettii 12J Rpic_1817 -55 4.8 AATTACAATCATTCTCATT
Ralstonia metallidurans CH34 pMOL30_093 -56 4.4 AATTACAATCATTCGCATT
Ralstonia metallidurans CH34 Rmet_5945 -62 4.2 AAATAGAATTACAATCATT
-56 4.4 AATTACAATCATTCGCATT
Position: -55
Score: 4.8
Sequence: AATTACAATCATTCTCATT
Locus tag: Rpic12D_5350
Rpic12D_5350 -55 4.8 AATTACAATCATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftr1
Ortholog function: iron permease FTR1
Ralstonia pickettii 12J Rpic_1641 -55 4.8 AATTACAATCATTCTCATT
Ralstonia pickettii 12J Rpic_1817 -55 4.8 AATTACAATCATTCTCATT
Ralstonia metallidurans CH34 pMOL30_093 -56 4.4 AATTACAATCATTCGCATT
Ralstonia metallidurans CH34 Rmet_5945 -62 4.2 AAATAGAATTACAATCATT
-56 4.4 AATTACAATCATTCGCATT
Position: -65
Score: 5.1
Sequence: AACAATAACAATTCTCATT
Locus tag: Rpic12D_0108
Rpic12D_0108 -65 5.1 AACAATAACAATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Reut_B4659
Ortholog function: TonB-dependent siderophore transporter
Ralstonia pickettii 12J Rpic_0101 -65 5.1 AACGATAACAATTCTCATT
Ralstonia eutropha JMP134 Reut_B4659 -180 4.7 ATTACGAATGATTCGTATT
Position: -75
Score: 5
Sequence: AACAAGAATTGTTCTCATT
Locus tag: Rpic12D_0224
Rpic12D_0224 -75 5 AACAAGAATTGTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Ralstonia solanacearum GMI1000 RSc0349 -77 5 AACAAGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_0205 -75 5 AACAAGAATTGTTCTCATT
Ralstonia metallidurans CH34 Rmet_0247 -91 5.2 AATGGGAATTGTTATCATT
Ralstonia eutropha JMP134 Reut_A0298 -1 5.2 AAtGggAATTgTTATCaTT
Ralstonia eutropha H16 H16_A0327 -89 5.2 AATGGGAATTGTTATCATT
Cupriavidus taiwanensis RALTA_A0266 -56 5.2 AATGGGAATTGTTATCATT
Position: -289
Score: 4.9
Sequence: AATAGGAATCATTATCGTT
Locus tag: Rpic12D_1792
Rpic12D_1792 -289 4.9 AATAGGAATCATTATCGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tonB
Ortholog function: Component of outer membrane metal uptake system, TonB family
Ralstonia solanacearum GMI1000 RSc1963 -287 5 AATGGGAATCATTATCGTT
Ralstonia pickettii 12J Rpic_2116 -289 4.9 AATAGGAATCATTATCGTT
Ralstonia metallidurans CH34 Rmet_2277 -208 5.3 AATAAGAATCATTATCGTT
Ralstonia eutropha JMP134 Reut_A2235 -187 5.3 AATAAGAATCATTATCGTT
Ralstonia eutropha H16 H16_A2532 -208 5.3 AATAAGAATCATTATCGTT
Cupriavidus taiwanensis RALTA_A2036 -206 5.3 AATAAGAATCATTATCGTT
Position: -96
Score: 5.5
Sequence: AATGATAACGATTCTCATT
Locus tag: Rpic12D_1795
Rpic12D_1795 -96 5.5 AATGATAACGATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: putative hemin uptake protein
Ralstonia solanacearum GMI1000 RSc1966 -82 5.5 AATGATAACGATTCTCATT
Ralstonia pickettii 12J Rpic_2119 -70 5.6 AATGATAACTATTCTCATT
Position: -75
Score: 4.7
Sequence: AACGAGAATCATTCTCATC
Locus tag: Rpic12D_2998
Rpic12D_2998 -75 4.7 AACGAGAATCATTCTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: DUF337-3
Ortholog function: Uncharacterized iron-regulated membrane protein, DUF337 family
Ralstonia solanacearum GMI1000 RS00511 -81 5.3 AACGAGAATCATTCTCATT
Ralstonia pickettii 12J Rpic_3345 -75 4.7 AACGAGAATCATTCTCATC
Position: -136
Score: 4.8
Sequence: ATTGAGAATCGTTGTCATT
Locus tag: Rpic12D_3915
Rpic12D_3915 -136 4.8 ATTGAGAATCGTTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Reut_A2876
Ortholog function: putative TonB-dependent siderophore transporter
Ralstonia pickettii 12J Rpic_3802 -136 4.8 ATTGAGAATCGTTGTCATT
Ralstonia metallidurans CH34 Rmet_3077 -42 4.2 AACGCGAATCGTTCGCATT
Ralstonia eutropha JMP134 Reut_A2876 -136 4.4 AACGCAAATCATTCGCATT
Position: -61
Score: 4.9
Sequence: AATGAAAACGATTCGCATT
Locus tag: Rpic12D_4062
Rpic12D_4062 -61 4.9 AATGAAAACGATTCGCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Ralstonia solanacearum GMI1000 RS03714 -66 4.9 AATGAAAACGATTCGCATT
Ralstonia pickettii 12J Rpic_3949 -61 4.9 AATGAAAACGATTCGCATT
Ralstonia metallidurans CH34 Rmet_5891 -82 4.2 ATCGAGAACGATTTCTATT
Ralstonia eutropha JMP134 Reut_B5430 -80 5.2 AATGAAAACGATTTTCATT
Ralstonia eutropha H16 H16_B0085 -80 5.2 AATGAAAACGATTTTCATT
Cupriavidus taiwanensis RALTA_B0077 -83 5.2 AATGAAAACGATTTTCATT
Position: -100
Score: 5.1
Sequence: AATAGGAATTGTTCTCATT
Locus tag: Rpic12D_4376
Rpic12D_4376 -100 5.1 AATAGGAATTGTTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A3182
Ortholog function: putative iron-regulated TonB-dependent transporter
Ralstonia solanacearum GMI1000 RS02469 -153 5.1 AATGGGAATTGTTCTCATT
Ralstonia pickettii 12J Rpic_4266 -100 5.1 AATAGGAATTGTTCTCATT
Ralstonia eutropha JMP134 Reut_A2878 -51 5 AATGATAATGCTTCGCATT
Ralstonia eutropha H16 H16_A3182 -153 4.7 AATAGGAATAATTCGCAAT
Cupriavidus taiwanensis RALTA_A2655 -92 4.7 AATAGGAATAATTCGCAAT
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