Propagation of Fur regulog to Ralstonia pickettii 12D
| Source regulog: | Fur - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia pickettii 12D |
| Orthologous TF(s) | Rpic12D_4057, Rpic12D_2576 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -55
Score: 4.8 Sequence: AATTACAATCATTCTCATT
Locus tag: Rpic12D_5282
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| Rpic12D_5282 | -55 | 4.8 | AATTACAATCATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftr1 | ||||
| Ortholog function: iron permease FTR1 | ||||
| Ralstonia pickettii 12J | Rpic_1641 | -55 | 4.8 | AATTACAATCATTCTCATT |
| Ralstonia pickettii 12J | Rpic_1817 | -55 | 4.8 | AATTACAATCATTCTCATT |
| Ralstonia metallidurans CH34 | pMOL30_093 | -56 | 4.4 | AATTACAATCATTCGCATT |
| Ralstonia metallidurans CH34 | Rmet_5945 | -62 | 4.2 | AAATAGAATTACAATCATT |
| -56 | 4.4 | AATTACAATCATTCGCATT | ||
|
Position: -55
Score: 4.8 Sequence: AATTACAATCATTCTCATT
Locus tag: Rpic12D_5350
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| Rpic12D_5350 | -55 | 4.8 | AATTACAATCATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftr1 | ||||
| Ortholog function: iron permease FTR1 | ||||
| Ralstonia pickettii 12J | Rpic_1641 | -55 | 4.8 | AATTACAATCATTCTCATT |
| Ralstonia pickettii 12J | Rpic_1817 | -55 | 4.8 | AATTACAATCATTCTCATT |
| Ralstonia metallidurans CH34 | pMOL30_093 | -56 | 4.4 | AATTACAATCATTCGCATT |
| Ralstonia metallidurans CH34 | Rmet_5945 | -62 | 4.2 | AAATAGAATTACAATCATT |
| -56 | 4.4 | AATTACAATCATTCGCATT | ||
|
Position: -65
Score: 5.1 Sequence: AACAATAACAATTCTCATT
Locus tag: Rpic12D_0108
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| Rpic12D_0108 | -65 | 5.1 | AACAATAACAATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Reut_B4659 | ||||
| Ortholog function: TonB-dependent siderophore transporter | ||||
| Ralstonia pickettii 12J | Rpic_0101 | -65 | 5.1 | AACGATAACAATTCTCATT |
| Ralstonia eutropha JMP134 | Reut_B4659 | -180 | 4.7 | ATTACGAATGATTCGTATT |
|
Position: -75
Score: 5 Sequence: AACAAGAATTGTTCTCATT
Locus tag: Rpic12D_0224
|
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| Rpic12D_0224 | -75 | 5 | AACAAGAATTGTTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Ralstonia solanacearum GMI1000 | RSc0349 | -77 | 5 | AACAAGAATTGTTCTCATT |
| Ralstonia pickettii 12J | Rpic_0205 | -75 | 5 | AACAAGAATTGTTCTCATT |
| Ralstonia metallidurans CH34 | Rmet_0247 | -91 | 5.2 | AATGGGAATTGTTATCATT |
| Ralstonia eutropha JMP134 | Reut_A0298 | -1 | 5.2 | AAtGggAATTgTTATCaTT |
| Ralstonia eutropha H16 | H16_A0327 | -89 | 5.2 | AATGGGAATTGTTATCATT |
| Cupriavidus taiwanensis | RALTA_A0266 | -56 | 5.2 | AATGGGAATTGTTATCATT |
|
Position: -289
Score: 4.9 Sequence: AATAGGAATCATTATCGTT
Locus tag: Rpic12D_1792
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| Rpic12D_1792 | -289 | 4.9 | AATAGGAATCATTATCGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tonB | ||||
| Ortholog function: Component of outer membrane metal uptake system, TonB family | ||||
| Ralstonia solanacearum GMI1000 | RSc1963 | -287 | 5 | AATGGGAATCATTATCGTT |
| Ralstonia pickettii 12J | Rpic_2116 | -289 | 4.9 | AATAGGAATCATTATCGTT |
| Ralstonia metallidurans CH34 | Rmet_2277 | -208 | 5.3 | AATAAGAATCATTATCGTT |
| Ralstonia eutropha JMP134 | Reut_A2235 | -187 | 5.3 | AATAAGAATCATTATCGTT |
| Ralstonia eutropha H16 | H16_A2532 | -208 | 5.3 | AATAAGAATCATTATCGTT |
| Cupriavidus taiwanensis | RALTA_A2036 | -206 | 5.3 | AATAAGAATCATTATCGTT |
|
Position: -96
Score: 5.5 Sequence: AATGATAACGATTCTCATT
Locus tag: Rpic12D_1795
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| Rpic12D_1795 | -96 | 5.5 | AATGATAACGATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemP | ||||
| Ortholog function: putative hemin uptake protein | ||||
| Ralstonia solanacearum GMI1000 | RSc1966 | -82 | 5.5 | AATGATAACGATTCTCATT |
| Ralstonia pickettii 12J | Rpic_2119 | -70 | 5.6 | AATGATAACTATTCTCATT |
|
Position: -75
Score: 4.7 Sequence: AACGAGAATCATTCTCATC
Locus tag: Rpic12D_2998
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| Rpic12D_2998 | -75 | 4.7 | AACGAGAATCATTCTCATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DUF337-3 | ||||
| Ortholog function: Uncharacterized iron-regulated membrane protein, DUF337 family | ||||
| Ralstonia solanacearum GMI1000 | RS00511 | -81 | 5.3 | AACGAGAATCATTCTCATT |
| Ralstonia pickettii 12J | Rpic_3345 | -75 | 4.7 | AACGAGAATCATTCTCATC |
|
Position: -136
Score: 4.8 Sequence: ATTGAGAATCGTTGTCATT
Locus tag: Rpic12D_3915
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| Rpic12D_3915 | -136 | 4.8 | ATTGAGAATCGTTGTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Reut_A2876 | ||||
| Ortholog function: putative TonB-dependent siderophore transporter | ||||
| Ralstonia pickettii 12J | Rpic_3802 | -136 | 4.8 | ATTGAGAATCGTTGTCATT |
| Ralstonia metallidurans CH34 | Rmet_3077 | -42 | 4.2 | AACGCGAATCGTTCGCATT |
| Ralstonia eutropha JMP134 | Reut_A2876 | -136 | 4.4 | AACGCAAATCATTCGCATT |
|
Position: -61
Score: 4.9 Sequence: AATGAAAACGATTCGCATT
Locus tag: Rpic12D_4062
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| Rpic12D_4062 | -61 | 4.9 | AATGAAAACGATTCGCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Ralstonia solanacearum GMI1000 | RS03714 | -66 | 4.9 | AATGAAAACGATTCGCATT |
| Ralstonia pickettii 12J | Rpic_3949 | -61 | 4.9 | AATGAAAACGATTCGCATT |
| Ralstonia metallidurans CH34 | Rmet_5891 | -82 | 4.2 | ATCGAGAACGATTTCTATT |
| Ralstonia eutropha JMP134 | Reut_B5430 | -80 | 5.2 | AATGAAAACGATTTTCATT |
| Ralstonia eutropha H16 | H16_B0085 | -80 | 5.2 | AATGAAAACGATTTTCATT |
| Cupriavidus taiwanensis | RALTA_B0077 | -83 | 5.2 | AATGAAAACGATTTTCATT |
|
Position: -100
Score: 5.1 Sequence: AATAGGAATTGTTCTCATT
Locus tag: Rpic12D_4376
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| Rpic12D_4376 | -100 | 5.1 | AATAGGAATTGTTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: h16_A3182 | ||||
| Ortholog function: putative iron-regulated TonB-dependent transporter | ||||
| Ralstonia solanacearum GMI1000 | RS02469 | -153 | 5.1 | AATGGGAATTGTTCTCATT |
| Ralstonia pickettii 12J | Rpic_4266 | -100 | 5.1 | AATAGGAATTGTTCTCATT |
| Ralstonia eutropha JMP134 | Reut_A2878 | -51 | 5 | AATGATAATGCTTCGCATT |
| Ralstonia eutropha H16 | H16_A3182 | -153 | 4.7 | AATAGGAATAATTCGCAAT |
| Cupriavidus taiwanensis | RALTA_A2655 | -92 | 4.7 | AATAGGAATAATTCGCAAT |