Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Zur regulog to Ralstonia pickettii 12D

Reference regulog properties
Source regulog: Zur - Ralstonia
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode:
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia pickettii 12D
Orthologous TF(s) Rpic12D_3379
Regulated genes 3
Built upon 19 sites [see more]
Predicted regulatory interactions in Ralstonia pickettii 12D
Locus tag Position Score Sequence
Position: -125
Score: 5.8
Sequence: AATTCGCAACTTAGTTGCATTGA
Locus tag: Rpic12D_0508
Rpic12D_0508 -125 5.8 AATTCGCAACTTAGTTGCATTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: h16_A0192
Ortholog function: hypothetical transmembrane protein
Ralstonia solanacearum GMI1000 RS04852 -95 5.7 AATTCGCAACTTAGTTGCATTGG
Ralstonia pickettii 12J Rpic_0521 -31 5.7 AATTCGCAACTTAGTTGCATTGG
Position: -223
Score: 5.9
Sequence: TTGTCGCAACACTGTTGCAGTTG
Locus tag: Rpic12D_1792
Rpic12D_1792 -223 5.9 TTGTCGCAACACTGTTGCAGTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: tonB
Ortholog function: Component of outer membrane metal uptake system, TonB family
Ralstonia solanacearum GMI1000 RSc1963 -220 6 TTGTCGCAACACTGTTGCATGAA
Ralstonia pickettii 12J Rpic_2116 -223 5.9 TTGTCGCAACACTGTTGCAGTTG
Position: -48
Score: 6
Sequence: TTCTTGCAACTCTGTTGCGTTTA
Locus tag: Rpic12D_2039
Rpic12D_2039 -48 6 TTCTTGCAACTCTGTTGCGTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zip
Ortholog function: Zinc transporter, ZIP family
Ralstonia solanacearum GMI1000 RS01372 -37 5.9 TTCTTGCAACTCTGTTGCGTTTG
Ralstonia pickettii 12J Rpic_2432 -48 6 TTCTTGCAACTCTGTTGCGTTTA
Ralstonia metallidurans CH34 Rmet_2621 -26 6.4 TTTTTGCAACATTGTTGCGTTAA
Ralstonia eutropha JMP134 Reut_A0876 -3 6.3 TTGTTGCAACATTGTTGCGTTTG
Ralstonia eutropha H16 H16_A2738 -35 6.4 TTATTGCAACATTGTTGCGTTAG
Cupriavidus taiwanensis RALTA_A2241 -35 6.4 TTATTGCAACATTGTTGCGTTTG
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