Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Ralstonia pickettii 12D

Reference regulog properties
Source regulog: NsrR - Ralstonia
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia pickettii 12D
Orthologous TF(s) Rpic12D_3286
Regulated genes 4
Built upon 23 sites [see more]
Predicted regulatory interactions in Ralstonia pickettii 12D
Locus tag Position Score Sequence
Position: -217
Score: 3.6
Sequence: TATGCGTGAAATATGCAAC
Position: -118
Score: 3.7
Sequence: CGTATATTTTTGATGCAAC
Position: -50
Score: 3.6
Sequence: GATGTACCTCTCATGAATG
Locus tag: Rpic12D_3286
Rpic12D_3286 -217 3.6 TATGCGTGAAATATGCAAC
-118 3.7 CGTATATTTTTGATGCAAC
-50 3.6 GATGTACCTCTCATGAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nsrR
Ortholog function: Nitrite-sensitive transcriptional repressor NsrR
Ralstonia solanacearum GMI1000 RS01705 -134 4.3 CATGCATATTAAATACCAC
Ralstonia pickettii 12J Rpic_3608 -218 3.6 TATGCGTGAAATATGCAAC
Position: -199
Score: 3.6
Sequence: CATTCATGAGAGGTACATC
Position: -131
Score: 3.7
Sequence: GTTGCATCAAAAATATACG
Position: -32
Score: 3.6
Sequence: GTTGCATATTTCACGCATA
Locus tag: Rpic12D_3287
Rpic12D_3287 -199 3.6 CATTCATGAGAGGTACATC
-131 3.7 GTTGCATCAAAAATATACG
-32 3.6 GTTGCATATTTCACGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Ralstonia eutropha H16 H16_A3533 -41 5.6 CATGCATTTAATTTGCATG
Cupriavidus taiwanensis RALTA_A2986 -40 4.6 CATGCATATTTTCTGCATG
Ralstonia metallidurans CH34 Rmet_3382 32 6 CATGCATTTTACATGCATG
Ralstonia eutropha JMP134 Reut_A3219 -41 5.5 CATGCATTTTGTTTGCATG
Ralstonia solanacearum GMI1000 RS01706 -133 4.3 GTGGTATTTAATATGCATG
Ralstonia pickettii 12J Rpic_3609 -32 3.6 GTTGCATATTTCACGCATA
Position: -51
Score: 5
Sequence: GTTGCATCCTTAATGCATC
Locus tag: Rpic12D_4127
Rpic12D_4127 -51 5 GTTGCATCCTTAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF10006
Ortholog function: hypothetical protein, PF10006
Ralstonia metallidurans CH34 Rmet_4922 -53 5.6 GATGCAATTTAAATGCATC
Ralstonia solanacearum GMI1000 RS03037 -103 3.7 CAAGTATCTGATATACATC
-53 5.8 GATGCATTCTCAATGCATC
Ralstonia pickettii 12J Rpic_4014 -101 4.3 CAAGCATCTGATATACATC
-51 5 GTTGCATCCTTAATGCATC
Position: -241
Score: 5
Sequence: GATGCATTAAGGATGCAAC
Locus tag: Rpic12D_4128
Rpic12D_4128 -241 5 GATGCATTAAGGATGCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirK
Ortholog function: Copper-containing nitrite reductase (EC 1.7.2.1)
Ralstonia solanacearum GMI1000 RS03038 -203 5.8 GATGCATTGAGAATGCATC
-153 3.7 GATGTATATCAGATACTTG
Ralstonia pickettii 12J Rpic_4015 -241 5 GATGCATTAAGGATGCAAC
-191 4.3 GATGTATATCAGATGCTTG
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