Propagation of FadP regulog to Burkholderia phytofirmans PsJN
| Source regulog: | FadP - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | |
| Biological process: | Fatty acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Burkholderia phytofirmans PsJN |
| Orthologous TF(s) | Bphyt_0660 |
| Regulated genes | 7 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -131
Score: 5.4 Sequence: TCGAACGACCGTTCTT
Locus tag: Bphyt_0432
|
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| Bphyt_0432 | -131 | 5.4 | TCGAACGACCGTTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nppD | ||||
| Ortholog function: 2-nitropropane dioxygenase NPD | ||||
| Ralstonia metallidurans CH34 | Rmet_0222 | -39 | 5.4 | TCGAACGATCGTTCCA |
| Ralstonia eutropha JMP134 | Reut_A0268 | -58 | 5.2 | TCGAACGACCGTTCAT |
| Ralstonia eutropha H16 | H16_A0293 | -59 | 5.2 | TCGAACGACCGTTCAT |
| Cupriavidus taiwanensis | RALTA_A0233 | -58 | 5.2 | TCGAACGACCGTTCAC |
|
Position: -50
Score: 5.3 Sequence: TAGTACGGCCGTTCGA
Locus tag: Bphyt_0660
|
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| Bphyt_0660 | -50 | 5.3 | TAGTACGGCCGTTCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadP | ||||
| Ortholog function: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family | ||||
| Ralstonia solanacearum GMI1000 | RS04423 | -136 | 5.7 | TTGAACGATCGTTCGA |
| Ralstonia pickettii 12J | Rpic_0347 | -136 | 5.6 | TTGAACGACCGTTCGA |
| Ralstonia metallidurans CH34 | Rmet_0384 | -142 | 4.9 | CTGAACGACCGTTCTT |
| Ralstonia eutropha JMP134 | Reut_A0445 | -140 | 4.9 | CTGAACGACCGTTCTT |
| Ralstonia eutropha H16 | H16_A0459 | -143 | 4.9 | CTGAACGACCGTTCTT |
| Cupriavidus taiwanensis | RALTA_A0402 | -141 | 4.9 | CTGAACGACCGTTCTT |
|
Position: -47
Score: 5.5 Sequence: TTGCACGATCGTGCTA
Locus tag: Bphyt_1371
|
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| Bphyt_1371 | -47 | 5.5 | TTGCACGATCGTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaH1 | ||||
| Ortholog function: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation | ||||
| Ralstonia solanacearum GMI1000 | RSc2013 | -49 | 4.9 | TCGCACGCTCGTGCTA |
| Ralstonia pickettii 12J | Rpic_2168 | -53 | 4.9 | TCGCACGCTCGTGCTA |
| Ralstonia metallidurans CH34 | Rmet_0974 | -44 | 4.9 | ACGTACGATCGTGCTA |
| Ralstonia eutropha JMP134 | Reut_A1010 | -43 | 4.9 | ACGTACGATCGTGCTA |
| Ralstonia eutropha H16 | H16_A1102 | -43 | 4.9 | ACGTACGATCGTGCTA |
| Cupriavidus taiwanensis | RALTA_A1087 | -31 | 4.9 | ACGTACGATCGTGCTA |
|
Position: -102
Score: 5.8 Sequence: TAGAACGATCGTGCTA
Locus tag: Bphyt_2765
|
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| Bphyt_2765 | -102 | 5.8 | TAGAACGATCGTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Ralstonia solanacearum GMI1000 | RSc1567 | -120 | 5.6 | TCGAACGACCGTTCAA |
| Ralstonia pickettii 12J | Rpic_1986 | -121 | 5.2 | TCGAACGATCGTTCAG |
| Ralstonia metallidurans CH34 | Rmet_1146 | -243 | 5.4 | AAGAACGGTCGTTCAA |
| Ralstonia eutropha JMP134 | Reut_A1262 | -211 | 5.1 | AAGAACGACCGTTCCA |
| Ralstonia eutropha H16 | H16_A1324 | -248 | 5.1 | AAGAACGACCGTTCCA |
| Cupriavidus taiwanensis | RALTA_A1245 | -288 | 5.1 | AAGAACGACCGTTCCA |