Propagation of Fur regulog to Ralstonia solanacearum UW551
| Source regulog: | Fur - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia solanacearum UW551 |
| Orthologous TF(s) | RRSL_01702, RRSL_02700 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -8
Score: 5 Sequence: AACAAGAATTGTTCTCATT
Locus tag: RRSL_03312
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| RRSL_03312 | -8 | 5 | AACAAGAATTGTTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Ralstonia solanacearum GMI1000 | RSc0349 | -77 | 5 | AACAAGAATTGTTCTCATT |
| Ralstonia pickettii 12J | Rpic_0205 | -75 | 5 | AACAAGAATTGTTCTCATT |
| Ralstonia metallidurans CH34 | Rmet_0247 | -91 | 5.2 | AATGGGAATTGTTATCATT |
| Ralstonia eutropha JMP134 | Reut_A0298 | -1 | 5.2 | AAtGggAATTgTTATCaTT |
| Ralstonia eutropha H16 | H16_A0327 | -89 | 5.2 | AATGGGAATTGTTATCATT |
| Cupriavidus taiwanensis | RALTA_A0266 | -56 | 5.2 | AATGGGAATTGTTATCATT |
|
Position: -45
Score: 4.6 Sequence: AGTGATAATCACTCTCATT
Locus tag: RRSL_03417
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| RRSL_03417 | -45 | 4.6 | AGTGATAATCACTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSp0100 | ||||
| Ortholog function: putative iron-regulated TonB-dependent transporter | ||||
| Ralstonia solanacearum GMI1000 | RS03023 | -59 | 4.6 | AGTGATAATCACTCTCATT |
|
Position: -229
Score: 5.6 Sequence: AATGAGAATTATTCTCAAT
Locus tag: RRSL_03024
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| RRSL_03024 | -229 | 5.6 | AATGAGAATTATTCTCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fecI | ||||
| Ortholog function: Probable RNA polymerase sigma factor FecI | ||||
| Ralstonia solanacearum GMI1000 | RS00872 | -237 | 5.6 | AATGAGAATTATTCTCAAT |
| -53 | 5 | AATGAGAATCATTCTTGAT | ||
|
Position: -79
Score: 5.3 Sequence: AACGAGAATCATTCTCATT
Locus tag: RRSL_02910
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| RRSL_02910 | -79 | 5.3 | AACGAGAATCATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: DUF337-3 | ||||
| Ortholog function: Uncharacterized iron-regulated membrane protein, DUF337 family | ||||
| Ralstonia solanacearum GMI1000 | RS00511 | -81 | 5.3 | AACGAGAATCATTCTCATT |
| Ralstonia pickettii 12J | Rpic_3345 | -75 | 4.7 | AACGAGAATCATTCTCATC |
|
Position: -217
Score: 4.9 Sequence: AATAGGAATCATTATCGTT
Locus tag: RRSL_01682
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| RRSL_01682 | -217 | 4.9 | AATAGGAATCATTATCGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tonB | ||||
| Ortholog function: Component of outer membrane metal uptake system, TonB family | ||||
| Ralstonia solanacearum GMI1000 | RSc1963 | -287 | 5 | AATGGGAATCATTATCGTT |
| Ralstonia pickettii 12J | Rpic_2116 | -289 | 4.9 | AATAGGAATCATTATCGTT |
| Ralstonia metallidurans CH34 | Rmet_2277 | -208 | 5.3 | AATAAGAATCATTATCGTT |
| Ralstonia eutropha JMP134 | Reut_A2235 | -187 | 5.3 | AATAAGAATCATTATCGTT |
| Ralstonia eutropha H16 | H16_A2532 | -208 | 5.3 | AATAAGAATCATTATCGTT |
| Cupriavidus taiwanensis | RALTA_A2036 | -206 | 5.3 | AATAAGAATCATTATCGTT |
|
Position: -26
Score: 5.5 Sequence: AATGATAACGATTCTCATT
Locus tag: RRSL_01685
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| RRSL_01685 | -26 | 5.5 | AATGATAACGATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemP | ||||
| Ortholog function: putative hemin uptake protein | ||||
| Ralstonia solanacearum GMI1000 | RSc1966 | -82 | 5.5 | AATGATAACGATTCTCATT |
| Ralstonia pickettii 12J | Rpic_2119 | -70 | 5.6 | AATGATAACTATTCTCATT |
|
Position: -115
Score: 5.6 Sequence: ATTGATAATGATTCTCATT
Locus tag: RRSL_01698
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| RRSL_01698 | -115 | 5.6 | ATTGATAATGATTCTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSp0244 | ||||
| Ortholog function: TonB-dependent outer-membrane hemin transporter | ||||
| Ralstonia solanacearum GMI1000 | RS03722 | -223 | 5.5 | ATTGATAATGATTCTTATT |
| -217 | 4.1 | AATGATTCTTATTTGCATT | ||
|
Position: -50
Score: 4.9 Sequence: AATGAAAACGATTCGCATT
Locus tag: RRSL_01707
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| RRSL_01707 | -50 | 4.9 | AATGAAAACGATTCGCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Ralstonia solanacearum GMI1000 | RS03714 | -66 | 4.9 | AATGAAAACGATTCGCATT |
| Ralstonia pickettii 12J | Rpic_3949 | -61 | 4.9 | AATGAAAACGATTCGCATT |
| Ralstonia metallidurans CH34 | Rmet_5891 | -82 | 4.2 | ATCGAGAACGATTTCTATT |
| Ralstonia eutropha JMP134 | Reut_B5430 | -80 | 5.2 | AATGAAAACGATTTTCATT |
| Ralstonia eutropha H16 | H16_B0085 | -80 | 5.2 | AATGAAAACGATTTTCATT |
| Cupriavidus taiwanensis | RALTA_B0077 | -83 | 5.2 | AATGAAAACGATTTTCATT |
|
Position: -120
Score: 5.5 Sequence: AATGAGAATCGTTATCATT
Locus tag: RRSL_01075
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| RRSL_01075 | -120 | 5.5 | AATGAGAATCGTTATCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc1807 | ||||
| Ortholog function: Probable iron-regulated TonB-dependent transporter | ||||
| Ralstonia solanacearum GMI1000 | RS04230 | -126 | 5.6 | AATGAGAATGATTATCAAT |