Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PsrA regulog to Burkholderia ambifaria MC40-6

Reference regulog properties
Source regulog: PsrA - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia ambifaria MC40-6
Orthologous TF(s) BamMC406_1457
Regulated genes 2
Built upon 9 sites [see more]
Predicted regulatory interactions in Burkholderia ambifaria MC40-6
Locus tag Position Score Sequence
Position: -12
Score: 4
Sequence: AAGGAAACAGCCATGTCGAA
Locus tag: BamMC406_6294
BamMC406_6294 -12 4 AAGGAAACAGCCATGTCGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabG
Ortholog function: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Ralstonia metallidurans CH34 Rmet_2428 -226 2.5 CATCAAACGCGGGTATGATG
Ralstonia eutropha JMP134 Reut_A2263 -198 2.5 GATCAAACGCGGGTATGATG
Ralstonia eutropha H16 H16_A2567 -200 2.5 CATCAAACGCGGGTATGATG
Cupriavidus taiwanensis RALTA_A2070 -201 2.5 CATCAAACGCGGGTATGATG
Position: -74
Score: 6.3
Sequence: ATAAAAACGGCTGTTTGAAT
Locus tag: BamMC406_1457
BamMC406_1457 -74 6.3 ATAAAAACGGCTGTTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: Transcriptional regulator for fatty acid degradation PsrA, TetR family
Ralstonia solanacearum GMI1000 RS04928 -122 4.6 TTTAAAACATCCGTTCCTAA
Ralstonia pickettii 12J Rpic_0418 -121 4.5 TTTCAAACGTCTGTTCCTAA
Ralstonia eutropha JMP134 Reut_A3446 -120 3.6 ATTAGAGCAGGCATTCGAAT
Ralstonia eutropha H16 H16_A3736 -104 4 CTTCGTACAGCTGTTTCAAG
Cupriavidus taiwanensis RALTA_A3194 -105 4 CTTCGTACAGCTGTTTCAAG
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