Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Burkholderia ambifaria MC40-6

Reference regulog properties
Source regulog: LexA - Ralstonia
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia ambifaria MC40-6
Orthologous TF(s) BamMC406_1516
Regulated genes 5
Built upon 62 sites [see more]
Predicted regulatory interactions in Burkholderia ambifaria MC40-6
Locus tag Position Score Sequence
Position: -57
Score: 6.1
Sequence: AACTGTATGAATATACAGTA
Locus tag: BamMC406_5945
BamMC406_5945 -57 6.1 AACTGTATGAATATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC subunit A
Ralstonia metallidurans CH34 Rmet_4549 -150 6.1 CACTGTATGTTCATACAGTA
Ralstonia eutropha JMP134 Reut_B4240 -160 5.6 CACTGTACGGATATACAGTC
Ralstonia eutropha H16 H16_B1571 -72 5.7 GACTGTATGGATGTACAGTG
Cupriavidus taiwanensis RALTA_B1379 -71 5.7 GACTGTATGGATGTACAGTG
Position: -34
Score: 6.5
Sequence: TACTGTATAAATATACAGTA
Locus tag: BamMC406_0946
BamMC406_0946 -34 6.5 TACTGTATAAATATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF04055
Ortholog function: DNA repair photolyase
Ralstonia metallidurans CH34 Rmet_0742 -48 6.5 TACTGTATATTTATACAGTA
Ralstonia eutropha H16 H16_A0887 -44 6.5 TACTGTATATATATACAGTG
Position: -45
Score: 5.6
Sequence: CACTGTATAAAAATACAGCT
Locus tag: BamMC406_1516
BamMC406_1516 -45 5.6 CACTGTATAAAAATACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Ralstonia solanacearum GMI1000 RSc1304 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia pickettii 12J Rpic_1179 -44 5.3 CACTGTATAAAATCACAGCA
-25 5.4 ACCTGTTCAAATATACAGTG
Ralstonia metallidurans CH34 Rmet_1981 -63 5.4 TACTGTATAAAATCACAGCA
-43 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha JMP134 Reut_A2008 -95 5 TACTGTATAAAATCACAGGC
-74 6 TACTGTTTAAACATACAGTG
Ralstonia eutropha H16 H16_A2281 -121 5.4 TACTGTATAAAATCACAGCA
-101 6 TACTGTTTAAACATACAGTG
Cupriavidus taiwanensis RALTA_A1825 -118 5.4 TACTGTATAAAATCACAGCA
-98 6 TACTGTTTAAACATACAGTG
Position: -94
Score: 5.8
Sequence: CACTGTTTTTTTATACAGTG
Locus tag: BamMC406_2573
BamMC406_2573 -94 5.8 CACTGTTTTTTTATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Ralstonia solanacearum GMI1000 RSc0551 -180 5.5 CACTGGTTTTTTATACAGTA
Ralstonia pickettii 12J Rpic_0471 -172 5.5 CACTGGTTTTTTATACAGTA
Ralstonia metallidurans CH34 Rmet_0466 -171 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha JMP134 Reut_A0527 -194 6.1 TACTGTTTTTTTATACAGTA
Ralstonia eutropha H16 H16_A0544 -159 6.1 TACTGTTTTTTTATACAGTA
Cupriavidus taiwanensis RALTA_A0499 -159 6.1 TACTGTTTTTTTATACAGTA
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