Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LiuQ regulog to Burkholderia ambifaria MC40-6

Reference regulog properties
Source regulog: LiuQ - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia ambifaria MC40-6
Orthologous TF(s) BamMC406_5122
Regulated genes 2
Built upon 14 sites [see more]
Predicted regulatory interactions in Burkholderia ambifaria MC40-6
Locus tag Position Score Sequence
Position: -158
Score: 5.5
Sequence: CTGAGTATCACTCAA
Position: -56
Score: 5.2
Sequence: TTGAGCGAAACTCAG
Locus tag: BamMC406_5121
BamMC406_5121 -158 5.5 CTGAGTATCACTCAA
-56 5.2 TTGAGCGAAACTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuA
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Ralstonia eutropha JMP134 Reut_A1466 -167 5 TTGACCAACACTCAA
-59 5.3 TTGAGCTACGCTCAA
Ralstonia eutropha H16 H16_A1972 -234 5.3 TTGAGCTTTACTCAA
-59 5 TTGAGTAACACTCAC
Position: -154
Score: 5.2
Sequence: CTGAGTTTCGCTCAA
Position: -52
Score: 5.5
Sequence: TTGAGTGATACTCAG
Locus tag: BamMC406_5122
BamMC406_5122 -154 5.2 CTGAGTTTCGCTCAA
-52 5.5 TTGAGTGATACTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuQ
Ortholog function: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
Ralstonia metallidurans CH34 Rmet_0611 -212 5.6 TTGAGTAATACTCAA
-111 5.1 TTGAGTAACATTCAA
Ralstonia eutropha JMP134 Reut_A1468 -154 5.3 TTGAGCGTAGCTCAA
-46 5 TTGAGTGTTGGTCAA
Ralstonia eutropha H16 H16_A1970 -247 5 GTGAGTGTTACTCAA
-72 5.3 TTGAGTAAAGCTCAA