Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LiuQ regulog to Burkholderia mallei SAVP1

Reference regulog properties
Source regulog: LiuQ - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia mallei SAVP1
Orthologous TF(s) BMASAVP1_0543
Regulated genes 2
Built upon 14 sites [see more]
Predicted regulatory interactions in Burkholderia mallei SAVP1
Locus tag Position Score Sequence
Position: -155
Score: 5.3
Sequence: CTGAGTGTTGCTCAA
Position: -55
Score: 5.2
Sequence: TTGAGCAAGACTCAA
Locus tag: BMASAVP1_0542
BMASAVP1_0542 -155 5.3 CTGAGTGTTGCTCAA
-55 5.2 TTGAGCAAGACTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuA
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Ralstonia eutropha JMP134 Reut_A1466 -167 5 TTGACCAACACTCAA
-59 5.3 TTGAGCTACGCTCAA
Ralstonia eutropha H16 H16_A1972 -234 5.3 TTGAGCTTTACTCAA
-59 5 TTGAGTAACACTCAC
Position: -167
Score: 5.2
Sequence: TTGAGTCTTGCTCAA
Position: -67
Score: 5.3
Sequence: TTGAGCAACACTCAG
Locus tag: BMASAVP1_0543
BMASAVP1_0543 -167 5.2 TTGAGTCTTGCTCAA
-67 5.3 TTGAGCAACACTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuQ
Ortholog function: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
Ralstonia metallidurans CH34 Rmet_0611 -212 5.6 TTGAGTAATACTCAA
-111 5.1 TTGAGTAACATTCAA
Ralstonia eutropha JMP134 Reut_A1468 -154 5.3 TTGAGCGTAGCTCAA
-46 5 TTGAGTGTTGGTCAA
Ralstonia eutropha H16 H16_A1970 -247 5 GTGAGTGTTACTCAA
-72 5.3 TTGAGTAAAGCTCAA