Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LiuQ regulog to Burkholderia cenocepacia AU 1054

Reference regulog properties
Source regulog: LiuQ - Ralstonia
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Burkholderia cenocepacia AU 1054
Orthologous TF(s) Bcen_3126
Regulated genes 2
Built upon 14 sites [see more]
Predicted regulatory interactions in Burkholderia cenocepacia AU 1054
Locus tag Position Score Sequence
Position: -129
Score: 5.2
Sequence: CTGAGTTTCGCTCAA
Position: -28
Score: 5.3
Sequence: CTGAGTGATACTCAG
Locus tag: Bcen_3126
Bcen_3126 -129 5.2 CTGAGTTTCGCTCAA
-28 5.3 CTGAGTGATACTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuQ
Ortholog function: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
Ralstonia metallidurans CH34 Rmet_0611 -212 5.6 TTGAGTAATACTCAA
-111 5.1 TTGAGTAACATTCAA
Ralstonia eutropha JMP134 Reut_A1468 -154 5.3 TTGAGCGTAGCTCAA
-46 5 TTGAGTGTTGGTCAA
Ralstonia eutropha H16 H16_A1970 -247 5 GTGAGTGTTACTCAA
-72 5.3 TTGAGTAAAGCTCAA
Position: -157
Score: 5.3
Sequence: CTGAGTATCACTCAG
Position: -56
Score: 5.2
Sequence: TTGAGCGAAACTCAG
Locus tag: Bcen_3127
Bcen_3127 -157 5.3 CTGAGTATCACTCAG
-56 5.2 TTGAGCGAAACTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuA
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Ralstonia eutropha JMP134 Reut_A1466 -167 5 TTGACCAACACTCAA
-59 5.3 TTGAGCTACGCTCAA
Ralstonia eutropha H16 H16_A1972 -234 5.3 TTGAGCTTTACTCAA
-59 5 TTGAGTAACACTCAC