Propagation of FadP regulog to Ralstonia solanacearum IPO1609
| Source regulog: | FadP - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | |
| Biological process: | Fatty acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia solanacearum IPO1609 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -63
Score: 5.5 Sequence: TAGCACGACCGTTCAA
Locus tag: RSIPO_00935
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| RSIPO_00935 | -63 | 5.5 | TAGCACGACCGTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc2046 | ||||
| Ortholog function: conserved hypothetical protein, DUF1178 | ||||
| Ralstonia solanacearum GMI1000 | RS03611 | -63 | 5.5 | TAGCACGACCGTTCAA |
| Ralstonia pickettii 12J | Rpic_2198 | -85 | 5.1 | GCGAACGGTCGTGCGA |
| -63 | 5.2 | TAGCACGACCGTTCAC | ||
| Ralstonia metallidurans CH34 | Rmet_0943 | -62 | 5.2 | TAGCACGACCGTTCAC |
| Ralstonia eutropha JMP134 | Reut_A0977 | -64 | 5.2 | TAGCACGACCGTTCAC |
| Ralstonia eutropha H16 | H16_A1066 | -87 | 5.3 | CCGAACGGTCGTTCTA |
| -64 | 5.2 | TAGCACGACCGTTCAC | ||
| Cupriavidus taiwanensis | RALTA_A1050 | -87 | 5.4 | ACGAACGGTCGTTCTA |
| -64 | 5.2 | TAGCACGACCGTTCAC | ||
|
Position: -87
Score: 4.9 Sequence: TCGCACGCTCGTGCTA
Locus tag: RSIPO_00966
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| RSIPO_00966 | -87 | 4.9 | TCGCACGCTCGTGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaH1 | ||||
| Ortholog function: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation | ||||
| Ralstonia solanacearum GMI1000 | RSc2013 | -49 | 4.9 | TCGCACGCTCGTGCTA |
| Ralstonia pickettii 12J | Rpic_2168 | -53 | 4.9 | TCGCACGCTCGTGCTA |
| Ralstonia metallidurans CH34 | Rmet_0974 | -44 | 4.9 | ACGTACGATCGTGCTA |
| Ralstonia eutropha JMP134 | Reut_A1010 | -43 | 4.9 | ACGTACGATCGTGCTA |
| Ralstonia eutropha H16 | H16_A1102 | -43 | 4.9 | ACGTACGATCGTGCTA |
| Cupriavidus taiwanensis | RALTA_A1087 | -31 | 4.9 | ACGTACGATCGTGCTA |
|
Position: -121
Score: 5.6 Sequence: TCGAACGACCGTTCAA
Locus tag: RSIPO_01111
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| RSIPO_01111 | -121 | 5.6 | TCGAACGACCGTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Ralstonia solanacearum GMI1000 | RSc1567 | -120 | 5.6 | TCGAACGACCGTTCAA |
| Ralstonia pickettii 12J | Rpic_1986 | -121 | 5.2 | TCGAACGATCGTTCAG |
| Ralstonia metallidurans CH34 | Rmet_1146 | -243 | 5.4 | AAGAACGGTCGTTCAA |
| Ralstonia eutropha JMP134 | Reut_A1262 | -211 | 5.1 | AAGAACGACCGTTCCA |
| Ralstonia eutropha H16 | H16_A1324 | -248 | 5.1 | AAGAACGACCGTTCCA |
| Cupriavidus taiwanensis | RALTA_A1245 | -288 | 5.1 | AAGAACGACCGTTCCA |
|
Position: -59
Score: 4.7 Sequence: TCGAACGGTCGTTTGC
Locus tag: RSIPO_01193
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| RSIPO_01193 | -59 | 4.7 | TCGAACGGTCGTTTGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bktB | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) | ||||
| Ralstonia solanacearum GMI1000 | RSc1637 | -59 | 4.8 | TCGAACGATCGTTTGC |
| Ralstonia pickettii 12J | Rpic_1910 | -59 | 4.7 | GCGAACGGTCGTGCGT |
| Ralstonia metallidurans CH34 | Rmet_1362 | -72 | 4.7 | AAGTACGGTCGTTCGT |
| Ralstonia eutropha JMP134 | Reut_A1353 | -71 | 5.1 | AAGTACGATCGTTCGA |
| Ralstonia eutropha H16 | H16_A1445 | -73 | 4.5 | AAGTACGCTCGTTCGA |
| Cupriavidus taiwanensis | RALTA_A1359 | -72 | 4.6 | AAGTACGACCGTTCAC |
|
Position: -34
Score: 4.6 Sequence: TAGAACGGTTGTTCAG
Locus tag: RSIPO_01251
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| RSIPO_01251 | -34 | 4.6 | TAGAACGGTTGTTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: alkK | ||||
| Ortholog function: Medium-chain-fatty-acid-CoA ligase | ||||
| Ralstonia solanacearum GMI1000 | RSc1749 | -42 | 4.6 | TAGAACGGTTGTTCAG |
| Ralstonia pickettii 12J | Rpic_1455 | -34 | 4.6 | TAGAACGGTTGTTCAG |
| Ralstonia metallidurans CH34 | Rmet_1863 | -73 | 4.6 | TAGCACGATTGTTCGT |
| Ralstonia eutropha JMP134 | Reut_A1398 | -54 | 4.7 | TAGAACGGTTGTTCGT |
| Ralstonia eutropha H16 | H16_A1519 | -55 | 4.4 | TAGTACGGTTGTTCGT |
| Cupriavidus taiwanensis | RALTA_A1460 | -73 | 4.6 | GCGAACGACCGTCCAA |
| -54 | 4.4 | TAGTACGGTTGTTCGT | ||
|
Position: -25
Score: 5 Sequence: AAGAACGATCGTTCAG
Locus tag: RSIPO_01294
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| RSIPO_01294 | -25 | 5 | AAGAACGATCGTTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc1772 | ||||
| Ortholog function: Alpha/beta hydrolase fold-3 domain protein | ||||
| Ralstonia solanacearum GMI1000 | RS02959 | 41 | 5 | AAGAACGATCGTTCAG |
| Ralstonia pickettii 12J | Rpic_1434 | -27 | 5.3 | TAGAACGATCGTTCAG |
| Ralstonia metallidurans CH34 | Rmet_1843 | 36 | 5.2 | TCGAACGACCGTTCAG |
| Ralstonia eutropha JMP134 | Reut_A1419 | 12 | 5.2 | TCGAACGACCGTTCAC |
| Ralstonia eutropha H16 | H16_A1554 | -97 | 5.3 | TCGAACGATCGTTCAC |
| Cupriavidus taiwanensis | RALTA_A1480 | -97 | 5.3 | TCGAACGATCGTTCAC |
|
Position: -94
Score: 5.2 Sequence: TAGCACGACCGTTCGT
Locus tag: RSIPO_01908
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| RSIPO_01908 | -94 | 5.2 | TAGCACGACCGTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfB | ||||
| Ortholog function: Electron transfer flavoprotein, beta subunit | ||||
| Ralstonia solanacearum GMI1000 | RSc0923 | -95 | 5.2 | TAGCACGACCGTTCGT |
| Ralstonia pickettii 12J | Rpic_0793 | -96 | 5.1 | TAGCACGACCGTTCGG |
| Ralstonia metallidurans CH34 | Rmet_0737 | -48 | 5.5 | TAGTACGATCGTTCGA |
| Ralstonia eutropha JMP134 | Reut_A2550 | -97 | 5.5 | TAGTACGATCGTTCGA |
| Ralstonia eutropha H16 | H16_A0814 | -98 | 5.5 | TAGTACGATCGTTCGA |
| Cupriavidus taiwanensis | RALTA_A0795 | -98 | 5.5 | TAGTACGATCGTTCGA |
|
Position: -68
Score: 5.3 Sequence: TAGAACGATCGTTCAG
Locus tag: RSIPO_02217
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| RSIPO_02217 | -68 | 5.3 | TAGAACGATCGTTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD2 | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Ralstonia solanacearum GMI1000 | RSc0780 | -58 | 5.3 | TAGAACGATCGTTCAG |
| Ralstonia pickettii 12J | Rpic_0727 | -60 | 5.4 | TAGAACGATCGTTCGG |
| Ralstonia metallidurans CH34 | Rmet_2635 | -106 | 5.3 | TAGAACGGTCGTTCAG |
| Ralstonia eutropha JMP134 | Reut_A0823 | -73 | 5.4 | TAGAACGATCGTTCGG |
| Ralstonia eutropha H16 | H16_A2794 | -74 | 5.4 | TAGAACGATCGTTCGG |
| Cupriavidus taiwanensis | RALTA_A2284 | -73 | 5.4 | TAGAACGATCGTTCGG |
|
Position: -46
Score: 5.2 Sequence: TCGAACGACCATTCGA
Locus tag: RSIPO_02608
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| RSIPO_02608 | -46 | 5.2 | TCGAACGACCATTCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD1 | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Ralstonia solanacearum GMI1000 | RSc2857 | -47 | 5.2 | TCGAACGACCATTCGA |
| Ralstonia pickettii 12J | Rpic_3104 | -46 | 4.8 | ACGAACGACCATTCGA |
| Ralstonia metallidurans CH34 | Rmet_3148 | -32 | 4.7 | TCGAACGACCATTCAG |
| Ralstonia eutropha JMP134 | Reut_A2994 | -34 | 4.7 | TCGAACGACCATTCAG |
| Ralstonia eutropha H16 | H16_A3288 | -34 | 4.7 | TCGAACGACCATTCAG |
| Cupriavidus taiwanensis | RALTA_A2744 | -35 | 4.7 | TCGAACGACCATTCAG |