Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Ralstonia solanacearum IPO1609

Reference regulog properties
Source regulog: NsrR - Ralstonia
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia solanacearum IPO1609
Orthologous TF(s) RSIPO_00013
Regulated genes 4
Built upon 23 sites [see more]
Predicted regulatory interactions in Ralstonia solanacearum IPO1609
Locus tag Position Score Sequence
Position: -255
Score: 5.8
Sequence: GATGCATTGAGAATGCATC
Locus tag: RSIPO_03194
RSIPO_03194 -255 5.8 GATGCATTGAGAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirK
Ortholog function: Copper-containing nitrite reductase (EC 1.7.2.1)
Ralstonia solanacearum GMI1000 RS03038 -203 5.8 GATGCATTGAGAATGCATC
-153 3.7 GATGTATATCAGATACTTG
Ralstonia pickettii 12J Rpic_4015 -241 5 GATGCATTAAGGATGCAAC
-191 4.3 GATGTATATCAGATGCTTG
Position: -54
Score: 5.8
Sequence: GATGCATTCTCAATGCATC
Locus tag: RSIPO_03195
RSIPO_03195 -54 5.8 GATGCATTCTCAATGCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF10006
Ortholog function: hypothetical protein, PF10006
Ralstonia metallidurans CH34 Rmet_4922 -53 5.6 GATGCAATTTAAATGCATC
Ralstonia solanacearum GMI1000 RS03037 -103 3.7 CAAGTATCTGATATACATC
-53 5.8 GATGCATTCTCAATGCATC
Ralstonia pickettii 12J Rpic_4014 -101 4.3 CAAGCATCTGATATACATC
-51 5 GTTGCATCCTTAATGCATC
Position: -135
Score: 4.2
Sequence: CATGCATATCAAATACCAC
Position: -67
Score: 5.5
Sequence: GATTCATTGCCAATGAATG
Locus tag: RSIPO_00013
RSIPO_00013 -135 4.2 CATGCATATCAAATACCAC
-67 5.5 GATTCATTGCCAATGAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nsrR
Ortholog function: Nitrite-sensitive transcriptional repressor NsrR
Ralstonia solanacearum GMI1000 RS01705 -134 4.3 CATGCATATTAAATACCAC
Ralstonia pickettii 12J Rpic_3608 -218 3.6 TATGCGTGAAATATGCAAC
Position: -187
Score: 5.5
Sequence: CATTCATTGGCAATGAATC
Position: -119
Score: 4.2
Sequence: GTGGTATTTGATATGCATG
Locus tag: RSIPO_00014
RSIPO_00014 -187 5.5 CATTCATTGGCAATGAATC
-119 4.2 GTGGTATTTGATATGCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmp
Ortholog function: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
Ralstonia eutropha H16 H16_A3533 -41 5.6 CATGCATTTAATTTGCATG
Cupriavidus taiwanensis RALTA_A2986 -40 4.6 CATGCATATTTTCTGCATG
Ralstonia metallidurans CH34 Rmet_3382 32 6 CATGCATTTTACATGCATG
Ralstonia eutropha JMP134 Reut_A3219 -41 5.5 CATGCATTTTGTTTGCATG
Ralstonia solanacearum GMI1000 RS01706 -133 4.3 GTGGTATTTAATATGCATG
Ralstonia pickettii 12J Rpic_3609 -32 3.6 GTTGCATATTTCACGCATA
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