Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NtrC regulog to Ralstonia solanacearum IPO1609

Reference regulog properties
Source regulog: NtrC - Ralstonia
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia solanacearum IPO1609
Orthologous TF(s) RSIPO_01565
Regulated genes 3
Built upon 28 sites [see more]
Predicted regulatory interactions in Ralstonia solanacearum IPO1609
Locus tag Position Score Sequence
Position: -234
Score: 4.9
Sequence: TGCACCGAAACCGTGCG
Locus tag: RSIPO_04257
RSIPO_04257 -234 4.9 TGCACCGAAACCGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Ralstonia solanacearum GMI1000 RS03167 -258 4.8 TGCACCGAAACCGTGCA
Ralstonia pickettii 12J Rpic_4163 -272 4.4 TGCACCGAAAGCGTGCG
Ralstonia metallidurans CH34 Rmet_4817 -284 5 CGCACCATTGCCGTGCG
Ralstonia eutropha JMP134 Reut_B4859 -271 4.2 CGCACCATGACTGTGCC
Position: -191
Score: 4.6
Sequence: TGCACCAATTTGTGGCG
Locus tag: RSIPO_02621
RSIPO_02621 -191 4.6 TGCACCAATTTGTGGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: Dipeptide ABC transporter, substrate-binding component
Ralstonia solanacearum GMI1000 RSc2870 -193 4.6 TGCACCAATTTGTGGCG
Ralstonia metallidurans CH34 Rmet_3158 -218 4.5 CGCAGCATTGCGGGGCA
-91 4.3 CGCACCAAAATGCGGCC
Ralstonia eutropha JMP134 Reut_A3006 -93 4.9 CGCACCAAAATGCAGCG
Ralstonia eutropha H16 H16_A3298 -93 4.7 CGCACCAAAACGCAGCG
Cupriavidus taiwanensis RALTA_A2753 -93 4.6 CGCACCAAAAAGCAGCG