Propagation of LexA regulog to Ralstonia eutropha JMP134
| Source regulog: | LexA - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia eutropha JMP134 |
| Orthologous TF(s) | Reut_A2008 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -6
Score: 5.7 Sequence: GCCTGTATGGATATACAGTT
Locus tag: Reut_A0283
|
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| Reut_A0283 | -6 | 5.7 | GCCTGTATGGATATACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrD | ||||
| Ortholog function: ATP-dependent DNA helicase II | ||||
| Ralstonia solanacearum GMI1000 | RS05321 | -39 | 6 | TGCTGTATATTTATACAGTT |
| Ralstonia pickettii 12J | Rpic_4129 | -40 | 5.9 | TGCTGTATATTCATACAGTT |
| Ralstonia metallidurans CH34 | Rmet_0232 | -66 | 5.6 | GGCTGTATGGATATACAGTG |
| Ralstonia eutropha JMP134 | Reut_A0283 | -6 | 5.7 | GCCTGTATGGATATACAGTT |
| Ralstonia eutropha H16 | H16_A0305 | -68 | 5.7 | CCCTGTATGGATATACAGTT |
| Cupriavidus taiwanensis | RALTA_A0247 | -62 | 5.6 | GGCTGTATGGATATACAGTT |
|
Position: -194
Score: 6.1 Sequence: TACTGTTTTTTTATACAGTA
Locus tag: Reut_A0527
|
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| Reut_A0527 | -194 | 6.1 | TACTGTTTTTTTATACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: Recombinase A | ||||
| Ralstonia solanacearum GMI1000 | RSc0551 | -180 | 5.5 | CACTGGTTTTTTATACAGTA |
| Ralstonia pickettii 12J | Rpic_0471 | -172 | 5.5 | CACTGGTTTTTTATACAGTA |
| Ralstonia metallidurans CH34 | Rmet_0466 | -171 | 6.1 | TACTGTTTTTTTATACAGTA |
| Ralstonia eutropha JMP134 | Reut_A0527 | -194 | 6.1 | TACTGTTTTTTTATACAGTA |
| Ralstonia eutropha H16 | H16_A0544 | -159 | 6.1 | TACTGTTTTTTTATACAGTA |
| Cupriavidus taiwanensis | RALTA_A0499 | -159 | 6.1 | TACTGTTTTTTTATACAGTA |
|
Position: -50
Score: 6.4 Sequence: TACTGTATATATTTACAGTA
Locus tag: Reut_B3817
|
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| Reut_B3817 | -50 | 6.4 | TACTGTATATATTTACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BPSS1334 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Ralstonia solanacearum GMI1000 | RS00884 | -44 | 5.9 | GCCTGTATATATTTACAGTG |
| -29 | 5.2 | CAGTGTACGTATATACAGTC | ||
| Ralstonia pickettii 12J | Rpic_4716 | -45 | 6 | AACTGTATATATTCACAGTA |
| -26 | 5.3 | AACTGTGAATTTATACAGTG | ||
| Ralstonia metallidurans CH34 | Rmet_1637 | -62 | 6.3 | CACTGTATATATTTACAGTA |
| -43 | 5.2 | AACTGTATGGATGAACAGTC | ||
| Ralstonia eutropha JMP134 | Reut_B3817 | -50 | 6.4 | TACTGTATATATTTACAGTA |
| -31 | 5.3 | ACCTGTATGGATAAACAGTG | ||
| Ralstonia eutropha H16 | H16_B0943 | -51 | 6.4 | TACTGTATATATTTACAGTA |
| -32 | 5.3 | ACCTGTATGGATGAACAGTA | ||
| Cupriavidus taiwanensis | RALTA_B0767 | -67 | 6.4 | TACTGTATATATTTACAGTA |
| -48 | 5.1 | ACCTGTATGGATGAACAGTG | ||
|
Position: -160
Score: 5.6 Sequence: CACTGTACGGATATACAGTC
Locus tag: Reut_B4240
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| Reut_B4240 | -160 | 5.6 | CACTGTACGGATATACAGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrA | ||||
| Ortholog function: Excinuclease ABC subunit A | ||||
| Ralstonia metallidurans CH34 | Rmet_4549 | -150 | 6.1 | CACTGTATGTTCATACAGTA |
| Ralstonia eutropha JMP134 | Reut_B4240 | -160 | 5.6 | CACTGTACGGATATACAGTC |
| Ralstonia eutropha H16 | H16_B1571 | -72 | 5.7 | GACTGTATGGATGTACAGTG |
| Cupriavidus taiwanensis | RALTA_B1379 | -71 | 5.7 | GACTGTATGGATGTACAGTG |
|
Position: -51
Score: 6 Sequence: GACTGTATATTCGTACAGTA
Locus tag: Reut_B5317
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| Reut_B5317 | -51 | 6 | GACTGTATATTCGTACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: H16_B2553 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Ralstonia metallidurans CH34 | Rmet_5910 | -42 | 6.3 | CACTGTATATTTATACAGTG |
| Ralstonia eutropha JMP134 | Reut_B5317 | -51 | 6 | GACTGTATATTCGTACAGTA |
| Ralstonia eutropha H16 | H16_B2553 | -51 | 6 | GACTGTATATTCGTACAGTA |
| Cupriavidus taiwanensis | RALTA_B2284 | -42 | 6 | GACTGTATATTCGTACAGTA |
|
Position: -44
Score: 6.1 Sequence: GACTGTATATTCATACAGTT
Locus tag: Reut_B5827
|
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| Reut_B5827 | -44 | 6.1 | GACTGTATATTCATACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: PF06733 | ||||
| Ortholog function: DinG family ATP-dependent helicase CPE1197 | ||||
| Ralstonia eutropha JMP134 | Reut_B5827 | -44 | 6.1 | GACTGTATATTCATACAGTT |
| Ralstonia eutropha H16 | H16_B1265 | -103 | 6.3 | TACTGTATATTCATACAGTT |
| Cupriavidus taiwanensis | RALTA_B1170 | -88 | 6.2 | TACTGTATATTTGTACAGTT |