Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Ralstonia eutropha JMP134

Reference regulog properties
Source regulog: NtrC - Ralstonia
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia eutropha JMP134
Orthologous TF(s) Reut_A2054
Regulated genes 4
Built upon 28 sites [see more]
Predicted regulatory interactions in Ralstonia eutropha JMP134
Locus tag Position Score Sequence
Position: -80
Score: 4.6
Sequence: AGCACCATCAAGGGGCG
Locus tag: Reut_A2056
Reut_A2056 -80 4.6 AGCACCATCAAGGGGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrZ
Ortholog function: Conserved hypothetical signal peptide protein
Ralstonia solanacearum GMI1000 RS02776 -334 5.1 CGCACTATGATGGTGCG
Ralstonia pickettii 12J Rpic_1087 -346 4.7 TGCACCGTTTATGTGCG
Ralstonia metallidurans CH34 Rmet_2061 -193 4.4 TGCACCAGGAAGGGGCG
Ralstonia eutropha JMP134 Reut_A2056 -80 4.6 AGCACCATCAAGGGGCG
Ralstonia eutropha H16 H16_A2334 -95 4.7 TGCACCAGAAAGGGGCG
Cupriavidus taiwanensis RALTA_A1879 -190 4.5 TGCACCACAAGGGGGCG
Position: -93
Score: 4.9
Sequence: CGCACCAAAATGCAGCG
Locus tag: Reut_A3006
Reut_A3006 -93 4.9 CGCACCAAAATGCAGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: Dipeptide ABC transporter, substrate-binding component
Ralstonia solanacearum GMI1000 RSc2870 -193 4.6 TGCACCAATTTGTGGCG
Ralstonia metallidurans CH34 Rmet_3158 -218 4.5 CGCAGCATTGCGGGGCA
-91 4.3 CGCACCAAAATGCGGCC
Ralstonia eutropha JMP134 Reut_A3006 -93 4.9 CGCACCAAAATGCAGCG
Ralstonia eutropha H16 H16_A3298 -93 4.7 CGCACCAAAACGCAGCG
Cupriavidus taiwanensis RALTA_A2753 -93 4.6 CGCACCAAAAAGCAGCG
Position: -232
Score: 4.7
Sequence: TGCACCACTAAGGTTCA
Position: -91
Score: 4.6
Sequence: TCCACCATGAAGGTGCA
Locus tag: Reut_B4038
Reut_B4038 -232 4.7 TGCACCACTAAGGTTCA
-91 4.6 TCCACCATGAAGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: amtB
Ortholog function: Ammonium transporter
Ralstonia pickettii 12J Rpic_0087 -137 4.9 CGCACGACCATGGTGCG
Ralstonia metallidurans CH34 Rmet_4750 -185 4.5 TGCGCCATCACGGCGCA
Ralstonia eutropha JMP134 Reut_B4038 -232 4.7 TGCACCACTAAGGTTCA
-91 4.6 TCCACCATGAAGGTGCA
Ralstonia eutropha H16 H16_B1234 -221 5.1 CGCACCATAACGGTTCA
-188 4.9 CGCGCCATTTTGGCGCA
Cupriavidus taiwanensis RALTA_B1139 -187 4.9 CGCGCCATTTTGGCGCA
Position: -271
Score: 4.2
Sequence: CGCACCATGACTGTGCC
Locus tag: Reut_B4859
Reut_B4859 -271 4.2 CGCACCATGACTGTGCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Ralstonia solanacearum GMI1000 RS03167 -258 4.8 TGCACCGAAACCGTGCA
Ralstonia pickettii 12J Rpic_4163 -272 4.4 TGCACCGAAAGCGTGCG
Ralstonia metallidurans CH34 Rmet_4817 -284 5 CGCACCATTGCCGTGCG
Ralstonia eutropha JMP134 Reut_B4859 -271 4.2 CGCACCATGACTGTGCC
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