Propagation of NtrC regulog to Ralstonia eutropha JMP134
| Source regulog: | NtrC - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia eutropha JMP134 |
| Orthologous TF(s) | Reut_A2054 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -80
Score: 4.6 Sequence: AGCACCATCAAGGGGCG
Locus tag: Reut_A2056
|
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| Reut_A2056 | -80 | 4.6 | AGCACCATCAAGGGGCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ntrZ | ||||
| Ortholog function: Conserved hypothetical signal peptide protein | ||||
| Ralstonia solanacearum GMI1000 | RS02776 | -334 | 5.1 | CGCACTATGATGGTGCG |
| Ralstonia pickettii 12J | Rpic_1087 | -346 | 4.7 | TGCACCGTTTATGTGCG |
| Ralstonia metallidurans CH34 | Rmet_2061 | -193 | 4.4 | TGCACCAGGAAGGGGCG |
| Ralstonia eutropha JMP134 | Reut_A2056 | -80 | 4.6 | AGCACCATCAAGGGGCG |
| Ralstonia eutropha H16 | H16_A2334 | -95 | 4.7 | TGCACCAGAAAGGGGCG |
| Cupriavidus taiwanensis | RALTA_A1879 | -190 | 4.5 | TGCACCACAAGGGGGCG |
|
Position: -93
Score: 4.9 Sequence: CGCACCAAAATGCAGCG
Locus tag: Reut_A3006
|
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| Reut_A3006 | -93 | 4.9 | CGCACCAAAATGCAGCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dppA | ||||
| Ortholog function: Dipeptide ABC transporter, substrate-binding component | ||||
| Ralstonia solanacearum GMI1000 | RSc2870 | -193 | 4.6 | TGCACCAATTTGTGGCG |
| Ralstonia metallidurans CH34 | Rmet_3158 | -218 | 4.5 | CGCAGCATTGCGGGGCA |
| -91 | 4.3 | CGCACCAAAATGCGGCC | ||
| Ralstonia eutropha JMP134 | Reut_A3006 | -93 | 4.9 | CGCACCAAAATGCAGCG |
| Ralstonia eutropha H16 | H16_A3298 | -93 | 4.7 | CGCACCAAAACGCAGCG |
| Cupriavidus taiwanensis | RALTA_A2753 | -93 | 4.6 | CGCACCAAAAAGCAGCG |
|
Position: -232
Score: 4.7 Sequence: TGCACCACTAAGGTTCA
Position: -91
Score: 4.6 Sequence: TCCACCATGAAGGTGCA
Locus tag: Reut_B4038
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| Reut_B4038 | -232 | 4.7 | TGCACCACTAAGGTTCA | |
| -91 | 4.6 | TCCACCATGAAGGTGCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amtB | ||||
| Ortholog function: Ammonium transporter | ||||
| Ralstonia pickettii 12J | Rpic_0087 | -137 | 4.9 | CGCACGACCATGGTGCG |
| Ralstonia metallidurans CH34 | Rmet_4750 | -185 | 4.5 | TGCGCCATCACGGCGCA |
| Ralstonia eutropha JMP134 | Reut_B4038 | -232 | 4.7 | TGCACCACTAAGGTTCA |
| -91 | 4.6 | TCCACCATGAAGGTGCA | ||
| Ralstonia eutropha H16 | H16_B1234 | -221 | 5.1 | CGCACCATAACGGTTCA |
| -188 | 4.9 | CGCGCCATTTTGGCGCA | ||
| Cupriavidus taiwanensis | RALTA_B1139 | -187 | 4.9 | CGCGCCATTTTGGCGCA |
|
Position: -271
Score: 4.2 Sequence: CGCACCATGACTGTGCC
Locus tag: Reut_B4859
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| Reut_B4859 | -271 | 4.2 | CGCACCATGACTGTGCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Ralstonia solanacearum GMI1000 | RS03167 | -258 | 4.8 | TGCACCGAAACCGTGCA |
| Ralstonia pickettii 12J | Rpic_4163 | -272 | 4.4 | TGCACCGAAAGCGTGCG |
| Ralstonia metallidurans CH34 | Rmet_4817 | -284 | 5 | CGCACCATTGCCGTGCG |
| Ralstonia eutropha JMP134 | Reut_B4859 | -271 | 4.2 | CGCACCATGACTGTGCC |